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Job DescriptionQ46829
Confidence100.00%DateThu Jan 5 12:34:51 GMT 2012
Rank43Aligned Residues288
% Identity17%Templated1v6wa2
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases beta-glycanases
Resolution2.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   10.........20.........30.........40.........50.........60.........70.........80.........
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Query Sequence  KDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVLPGKYYPNHEAVDFYGHYKEDIKLFAEMGFKCFR
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Template Sequence  SGRYFGTAIASGKLGDS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AYTTIA. . SREFNMVTAE
Template Known Secondary structure  TT

GGGTT
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SS
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   90.........100.........110.........120........ .130.........140.........150.........160.......
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Query Sequence  TSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEP. . VITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEVVFER
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Template Sequence  NEMKIDATEP. . QRGQFNFS. . . AGDRVYNWAVQNGKQVRGHTLAWHSQQPGWM. . . . QSLSGSTLRQAMIDHINGVMGH
Template Known Secondary structure  STTS
S..BTTB


...TT
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....T

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   45....50.... .....60.. .......70.........80.........90... ......100.........110.....
 
   168.170.........180.........190.........200.........210.........220.........230.........240.......
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Query Sequence  YKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAARRINPEMKVGCMLAMVPL
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Template Sequence  YKGKIAQWDVVNEAFSDDGSGGRRDS. . . . . . . . . . . . . . . . . . . NLQRTGNDWIEVAFRTARAADPAAKLCYNDYNI. .
Template Known Secondary structure  TTTT
S

B
SSSS

B

S...................T
TT
TTSSS
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   116...120.........130.........140. ........150.........160.........170....
 
   248.250.........260.........270.........280.........290.........300.........310.........320.......
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Query Sequence  YPYSCNPDDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGG
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . ENWTWAKTQGVYNMVRDFKQRG. . . . . . . . . . . . . . . VPIDCVGFQSHF. . . . . . . . .
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   175....180.........190...... ...200........
 
   328.330.........340.........350.........360.........370.........380.........390.........400.......
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Query Sequence  TGDAISGFEGSVPNPYVKASDWGWQIDPVGLRYALCELYERYQRPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEE
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . NSGSPYNSNFRTTLQNF. AALGVDVAITELDIQGA. . . . . . . . . SSSTYAAVTNDCLAV
Template Known Secondary structure  .....................BTTB


TT.TTT
TT
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   209210.........220..... ....230.........240.. .......250.......
 
   408.410.........420.........430.........440.........450.........460.........470...
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Query Sequence  MKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIA
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Template Sequence  . . . . . . . . . SRCLGITVWGVRDTDSWRSG. . . DTPLLFNGDGS. . . . . . . . . . KKAAYTAVLNALN
Template Known Secondary structure  .........TTS
SBGGGSTTGG...G

SSB
TT

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T
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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