Return to main results Retrieve Phyre Job Id

Job DescriptionQ46829
Confidence99.42%DateThu Jan 5 12:34:51 GMT 2012
Rank99Aligned Residues246
% Identity18%Templated1tvna1
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases beta-glycanases
Resolution1.41

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   74.... .80.........90.........100.........110.........120.........130.........140.........150..
Predicted Secondary structure  .





























Query SS confidence 




.









































































Query Sequence  KEDIK. LFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRK
Query Conservation   


 .

  

   









 
 
  
  
  

  
  


 
   

 




 




  
    


 
  
Alig confidence 




.






















.

































.............


Template Conservation        
    
 
 


           .           

  
  
   

 



 
   .............   
Template Sequence  AETVAKAKTEFNATLIRAAIGHGTSTGGS. LNFDWEGNMSRLDTVVNAAIAEDMYVIIDFHSHE. . . . . . . . . . . . . AHT
Template Known Secondary structure 

S

TTSTTS.TTT
TT

S
.............GGG
Template Predicted Secondary structure 













.













.............


Template SS confidence 















































































   41........50.........60......... 70.........80.........90.........100... ...
 
   153......160.........170... ......180.........190.........200.........210.........220.........230.
Predicted Secondary structure 




.






















Query SS confidence 




















.

























































Query Sequence  VVDFFVRFAEVVFERYKHKVK. YWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAARR
Query Conservation   
  
  

      




 . 
 




                
   
                
 


 
      
Alig confidence 




















.















............................













Template Conservation          
  

   
  
 
     


        ............................           

 
Template Sequence  DQATAVRFFEDVATKYGQYDNVIYEIYNEPLQISWVND. . . . . . . . . . . . . . . . . . . . . . . . . . . . IKPYAETVIDKIRA
Template Known Secondary structure 
TT
TT

S


S

TTTT............................T
Template Predicted Secondary structure 















............................
Template SS confidence 















































































   107..110.........120.........130.........140.... .....150........
 
   232.......240.........250.........260.........270.........280.........290.........300.........310
Predicted Secondary structure 





































.
Query SS confidence 














































































.
Query Sequence  INPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTCD.
Query Conservation        


        
      
  

           
    
 

                             
.
Alig confidence 












....................................................













.
Template Conservation   

   
 
 
  ....................................................               
Template Sequence  IDPDNLIVVGTPT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . WSQDVDVASQNPIDR
Template Known Secondary structure  T

S


....................................................T
S


S
Template Predicted Secondary structure 






....................................................














Template SS confidence 















































































   159160.........170. ........180......
 
   311........320.........330.........340.........350.........360.........370.........380.......
Predicted Secondary structure  ...
















































Query SS confidence  . . .












































































Query Sequence  . . . YLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLRYALCELYERYQRPLFIVENGFGAYDKVE
Query Conservation  ...
 




    
                           

 
 
 

   
      
  

 




        
Alig confidence  ...










.................................










.




















Template Conservation   
 
   
 
    .................................           .     

   


        
Template Sequence  ANIAYTLHFYAGTH. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GQSYRNKAQTA. LDNGIALFATEWGTVNADGNG
Template Known Secondary structure  SSTTT
.................................
.TT

SS
TTS
S
Template Predicted Secondary structure 







..................................















Template SS confidence 















































































   187..190.........200 .........210. ........220.........230..
 
   388.390.........400.........410.........420.........430.........440.........450.........460.......
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  EDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNW
Query Conservation      
 
  

 

   
  
  

  


 
 

  


 

 

  
 
  



  

  
       
 

 

  
Alig confidence 



...........














...















.



.....




.........






Template Conservation      ...........              
...    
           .    .....     .........    
  
Template Sequence  GVNI. . . . . . . . . . . NETDAWMAFFKTNNI. . . SHANWALNDKNEGASL. FTPG. . . . . GSWNS. . . . . . . . . LTSSGSK
Template Known Secondary structure 


...........T
...
S
SSSTT
S.B
TT.....

TTS.........B
Template Predicted Secondary structure 


...........


...







.


.....




.........


Template SS confidence 















































































   233... ...240.........250. ........260....... ..270. ..... ...280...
 
   468.470......
Predicted Secondary structure 

Query SS confidence 








Query Sequence  YKEVIASNG
Query Conservation 
  

  

Alig confidence 








Template Conservation           
Template Sequence  VKEIIQGWG
Template Known Secondary structure  TTT
Template Predicted Secondary structure 
Template SS confidence 








   284.....290..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions