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Job DescriptionQ46829
Confidence99.95%DateThu Jan 5 12:34:51 GMT 2012
Rank53Aligned Residues284
% Identity16%Templated1rh9a1
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases beta-glycanases
Resolution1.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   71........80.........90.. .......100.........110.........120.........130.........140......
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Query Sequence  GHYKEDIKLFAEMGFKCFRTSI. . . . AWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYG
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Template Conservation               
 
 

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Template Sequence  IKVTNTFQQASKYKMNVARTWAFSHGGSRPLQSA. . PGVYNEQMFQGLDFVISEAKKYGIHLIMSLVNNWDAFGGKKQYV
Template Known Secondary structure  TT

SS
SSSSS
S..TT
TT


BSSSSSSB
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   68.70.........80.........90.........100. ........110.........120.........130.........140.....
 
   147. .150.........160.........170... ......180.........190.........200.
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Query Sequence  SW. . . . . . . . . . . . . . . TNRKVVDFFVRFAEVVFERYKHKVK. . . . . . . . . . YWMTFNEINNQRNWRAPLFGYCCSGVVY
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Template Sequence  EWAVQRGQKLTSDDDFFTNPMVKGFYKNNVKVVLTRVNTITKVAYKDDPTILSWELINEPRCPSDLSGKT. . . . . . . . . .
Template Known Secondary structure  TT




GGGGGT

B
TTT
SBGGG
TTS
BS


TT
TTS..........
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   146...150.........160.........170.........180.........190.........200.........210.....
 
   202.......210.........220.........230.........240.........250.........260.........270.........280.
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Query Sequence  TEHENPEETMYQVLHHQFVASALAVKAARRINPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYYPS
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Template Sequence  . . . . . . . . . . . . . . . . FQNWVLEMAGYLKSIDSNHLLEIGLEGFYGNDMR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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SS







GGGG..............................
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   216...220.........230.........240.........
 
   282.......290.........300.........310.........320.........330.........340.........350.........360.
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Query Sequence  YVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLRYA
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Template Sequence  . . . . . . QYNPNSYIFGTNFISNNQVQGIDFTTIHMYPNQWLPGLTQEAQD. . . . . . . . . . . . . . . . . . . . . KWASQWIQV
Template Known Secondary structure  ......GGSGGG


S

TSTT




STTS
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   250.........260.........270.........280.........290... ......300..
 
   362.......370.........380.........390.........400.........410.........420.........430.........440.
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Query Sequence  LCELYERYQRPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKR
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Template Sequence  HIDDSKMLKKPLLIAEFGKSTKT. . . . . PGYTVAKRDNYFEKIYGTIFNCAK. SGGPCGGGLFWQVLG. . QGMSS. FDDG
Template Known Secondary structure  TS




TTS.....TT

.TT
SS
B

..TT
GG.G

S
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   303......310.........320..... ....330.........340......... 350.........360.... ..... 370...
 
   442......
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Query Sequence  YGFIYVN
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Template Conservation         
Template Sequence  YQVVLQE
Template Known Secondary structure 

B
GGG
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   374.....380
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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