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Job DescriptionQ46829
Confidence100.00%DateThu Jan 5 12:34:51 GMT 2012
Rank42Aligned Residues342
% Identity13%Templated1kwga2
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   70.........80.........90.. .......100.........110.........120.........130.........140........
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Query Sequence  YGHYKEDIKLFAEMGFKCFRTSI. AWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSW
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Template Sequence  KERWKEDARRMREAGLSHVRIGEFAWALLEP. . EPGRLEW. . . GWLDEAIATLAAEGLKVVLGTPTATPPKWLVDRYPEI
Template Known Secondary structure  T


TT

S..BTTB


...TTT

STTS


GGG
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   13......20.........30.........40... ......50 .........60.........70.........80.......
 
   149 150.........160.........170..... ....180.........190.........200......
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Query Sequence  T. . . . . . . . . . . . . . . . . . . . NRKVVDFFVRFAEVVFERYKHKVKYW. . MTFNEINNQRNWRAPLFGYCCSGVVYTEHEN
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Template Sequence  LPVDREGRRRRFGGRRHYCFSSPVYREEARRIVTLLAERYGGLEAVAGFQTDNEYGCHDTVRC. . . . . . . . . . YCPRCQE
Template Known Secondary structure  S
B
TTS
B

SSSS



TT
TT
TT
SSSTTTTTTS

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S
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   88.90.........100.........110.........120.........130.........140.........150 .......
 
   207..210.........220.........230.........240.........250.........260.........270.........280......
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Query Sequence  PEETMYQVLHHQFVASALAVKAARRINPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYYPSYVLNE
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Template Sequence  AFRGWLEARYGTIEALNEAWGTAFWSQRYRSFAEVELPHLTVAEPNPSHLLDYYRFASDQV. . . . . . . . . RAFNRLQVEI
Template Known Secondary structure  SSTTTGGG


SSGGG


S
S
SS


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   158.160.........170.........180.........190.........200.........210........ .220........
 
   287..290..... ....300.........310.........320.........330.........340.........350.........
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Query Sequence  WERRGFNIK. . . . . . . MEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLR
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Template Sequence  LRAHAPGKFVTHNFMGFFTDLDAFALAQDLDFASWDSYPLGFTDLMPLPPEEKLRYART. . . . . . . . . . . . . . GHPDVAA
Template Known Secondary structure  STT


TT

SS
GGGSSS
S


TTTT..............

TT
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   229230.........240.........250.........260.........270.........280....... ..290....
 
   360.........370.........380.........390.........400.........410.........420..... ....430........
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Query Sequence  YALCELYERYQRPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPW. GCIDCVSFTTGQY
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Template Sequence  FHHDLYRGVGRGRFWVMEQQPGPVNWA. . . . . . . PHNPSPAPGMVRLWTWEALA. HGAEVVSYFRWRQAPFAQEQ. . M. .
Template Known Secondary structure  TTT


S

SSS.......SS




TT.TT
S

SB

SSSTTT..T..
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   295....300.........310.........320. ........330.........340. ........350.........360. .
 
   439440.........450.........460.........470...
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Query Sequence  SKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIA
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Template Sequence  . . HAGLHRPDSA. . . . . . . . . . PDQGFFEAKRVAE
Template Known Secondary structure  ..S

SB
TTS
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   363......370.. .......380.....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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