Job Description Q46829 Confidence 31.93% Date Thu Jan 5 12:34:51 GMT 2012 Rank 303 Aligned Residues 201 % Identity 16% Template c3kruC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:flavin oxidoreductase/nadh oxidase; PDBTitle: crystal structure of the thermostable old yellow enzyme from2 thermoanaerobacter pseudethanolicus e39 Resolution 1.60 Å

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		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.																								.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	R	I	F	P	K	G	D	E	A	Q	P	N	E	E	G	L	K	F	Y	D	D	M	F	D	E	L	L	K	Y	N	I	E	P	V	I	T	L	S	H	F	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	P	L	H	L	V	Q	Q	Y	G	S	W	T	N	R
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template Conservation									.																																																																		.	.	.	.
Template Sequence		G	R	I	T	D	H	D	.	L	G	I	W	N	D	E	Q	V	K	E	L	K	K	I	V	D	I	C	K	A	N	G	A	V	M	G	I	Q	L	A	H	A	G	R	K	C	N	I	S	Y	E	D	V	V	G	P	S	P	I	K	A	G	D	R	Y	K	L	P	R	E	L	S	V	E	.	.	.	.	E	I	K
Template Known Secondary structure		G		S	S	T	T	S	.		B		S	S	T																T	T											G	G	G				T	T	S					S	S	S			S	S	T	T	S										.	.	.	.
Template Predicted Secondary structure									.																																																																		.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.					.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	V	D	F	F	V	R	F	A	E	V	V	F	E	R	Y	K	H	K	V	K	Y	W	M	T	F	N	E	I	N	N	Q	R	N	W	R	A	P	L	F	G	Y	C	C	S	G	V	V	Y	T	E	H	E	N	P	E	E	T	M	Y	Q	V	L	H	H	Q	F	V	A	S	A	L	A	V	K	A	A	R	R
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	I	V	K	A	F	G	E	A	A	K	R	A	N	L	A	G	Y	D	V	V	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	A	A	H	G	Y	L	I	H	E	F	L	S	P	L	S	N	K	R	K	D	E	Y	G	N	S	I	E	N	R	A	R	F	L	I	E	V	I	D	E	V	R	K
Template Known Secondary structure																		T		S					.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S								T	T	T					S	T	T	S	S	S					T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.															.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		232	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280												.	.	.	.	.	.	.	.	.	290	.	.							.
Predicted Secondary structure				.																																																.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Query SS confidence				.																																																.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Query Sequence		I	N	.	P	E	M	K	V	G	C	M	L	A	M	V	P	L	Y	P	Y	S	C	N	P	D	D	V	M	F	A	Q	E	S	M	R	E	R	Y	V	F	T	D	V	Q	L	R	G	Y	Y	P	.	.	.	.	.	.	.	.	.	.	.	S	Y	V	L	N	E	W	E	R	R	G	F	.	.	.	.	.	.	N
Query Conservation				.																																																.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Alig confidence				.																																																.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template Conservation
Template Sequence		N	W	P	E	N	K	P	I	F	V	R	V	S	A	D	D	Y	M	E	G	G	I	N	I	D	M	M	V	E	Y	I	N	M	I	K	D	K	V	D	L	I	D	V	S	S	G	G	L	L	N	V	D	I	N	L	Y	P	G	Y	Q	V	K	Y	A	E	T	I	K	K	R	C	N	I	K	T	S	A	V	G	L
Template Known Secondary structure		T	S		T	T	S											S	S	T	T	S														T	T	T		S									S	S								T	T	T	T												T							S	S
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	M	E	D	G	D	L	D	V	L	R	E	G	T	C	D	Y	L	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	T	Q	E	L	A	E	E	I	L	S	N	E	R	A	D	L	V	A	L
Template Known Secondary structure														T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions