Phyre 2 alignment of Q46829 with c3f55A

Job Description Q46829
Confidence 98.32% Date Thu Jan 5 12:34:51 GMT 2012

Rank 119 Aligned Residues 284

% Identity 17% Template c3f55A_

PDB info PDB header:hydrolase, allergen Chain: A: PDB Molecule:beta-1,3-glucanase; PDBTitle: crystal structure of the native endo beta-1,3-glucanase (hev b 2), a2 major allergen from hevea brasiliensis (space group p41)

Resolution 2.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	E	D	I	K	L	F	A	E	M	G	F	K	C	F	R	T	S	I	A	W	T	R	I	F	P	K	G	D	E	A	Q	P	N	E	E	G	L	K	F	Y	D	D	M	F	D	E	L	L	K	Y	N	I	E	P	V	I	T	L	S	H	F	E	M	P	L	H	L	V	Q	Q	Y	G	S	W	T	N	R	K	V
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template Sequence	S	E	V	I	A	L	Y	K	K	S	N	I	T	R	M	R	I	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	N	Q	.	.	.	.	.	.	.	A	V	L	E	A	L	R	G	S	N	I	E	L	I	L	G	V	P	N	S	D	L	Q	.	.	.	.	.	.	.	.	S	L	T	N	P	S	N
Template Known Secondary structure											T							S	.	.	.	.	.	.	.	.	.	.	.	.	.	S				.	.	.	.	.	.	.						T	T	T											T	T	T	T	T	.	.	.	.	.	.	.	.	G	G	G	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template SS confidence
	17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.														.	.	.	.								.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.									.	.	.	.	.	.	.

	154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	D	F	F	V	R	F	A	E	V	V	F	E	R	Y	K	H	K	V	K	Y	W	M	T	F	N	E	I	N	N	Q	R	N	W	R	A	P	L	F	G	Y	C	C	S	G	V	V	Y	T	E	H	E	N	P	E	E	T	M	Y	Q	V	L	H	H	Q	F	V	A	S	A	L	A	V	K	A	A	R	R	I	N
Query Conservation
Alig confidence							.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	A	K	S	W	V	Q	.	K	N	V	R	G	F	W	S	S	V	R	F	R	Y	I	A	V	G	N	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	V	N	R	G	T	A	W	L	A	Q	F	V	L	P	A	M	R	N	I	H	D	A	I	R	S	A	G
Template Known Secondary structure							.			T	T	T	T	T	T	T	T	T									S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S	T	T	T					T	T															T	T
Template Predicted Secondary structure							.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	69	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.																								.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.

	234	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence	P	E	M	.	.	K	V	G	C	M	L	A	M	V	P	L	Y	P	Y	S	C	N	P	D	D	V	M	F	A	Q	E	S	M	R	E	R	Y	V	F	T	D	V	Q	L	R	G	Y	Y	P	S	Y	V	L	N	E	W	E	R	R	G	F	N	I	K	M	E	D	G	D	L	D	V	L	R	E	G	T	C	D	Y
Query Conservation				.	.
Alig confidence				.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template Sequence	L	Q	D	Q	I	K	V	S	T	A	I	D	L	T	L	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	S	Y	P	P	S	A	G	A	F	R	D	D	V	R	S	Y	L	N	P	.	.	.	.	.	.	.	.	.	.	.	I	I	R	F	L	S	S	I	R	S	P
Template Known Secondary structure		T	T	T	S								S	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	G	G	G					G	G	G							.	.	.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.																						.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.												.	.	.	.	.	.	.	.	170	.	.

	312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370				.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.
Query SS confidence																																																												.	.	.
Query Sequence	L	G	F	S	Y	Y	M	T	N	A	V	K	A	E	G	G	T	G	D	A	I	S	G	F	E	G	S	V	P	N	P	Y	V	K	A	S	D	W	G	W	Q	I	D	P	V	G	L	R	Y	A	L	C	E	L	Y	E	R	Y	Q	.	.	.	R	P	L	F	I	V	E	N	G	F	G	A	Y	D	K	V	E	E
Query Conservation																																																												.	.	.
Alig confidence																													.																															.	.	.
Template Conservation																													.
Template Sequence	L	L	A	N	I	Y	P	Y	F	T	Y	A	G	N	P	R	D	I	S	L	P	Y	A	L	F	T	S	P	.	S	V	V	V	W	D	G	Q	R	G	Y	K	N	L	F	D	A	T	L	D	A	L	Y	S	A	L	E	R	A	S	G	G	S	L	E	V	V	V	S	E	S	G	W	P	S	A	G	A	F	A	A
Template Known Secondary structure															T	T	T	S						T	T			S	.	S		S				T	T					S															T	T	T		T	T												S	S	S	S	T	T
Template Predicted Secondary structure																													.
Template SS confidence
	173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.

	389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420						.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure																																	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.
Query Sequence	D	G	S	I	N	D	D	Y	R	I	D	Y	L	R	A	H	I	E	E	M	K	K	A	V	T	Y	D	G	V	D	L	M	.	.	.	.	.	G	Y	T	P	W	G	C	I	D	C	V	S	F	T	T	G	Q	Y	S	K	R	Y	G	F	I	Y	V	N	K	H	D	D	G	T	G	D	M	S	R	S	R	K
Query Conservation																																	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																	.							.	.	.	.	.											.															.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																	.																						.															.	.	.	.	.	.	.	.	.	.
Template Sequence	T	.	.	.	.	.	.	.	.	F	D	N	G	R	T	Y	L	S	N	L	I	Q	H	V	K	.	R	G	T	P	K	R	P	K	R	A	I	E	T	Y	L	F	A	M	F	D	E	.	N	K	K	Q	P	E	V	E	K	H	F	G	L	F	.	.	.	.	.	.	.	.	.	.	F	P	N	K	W	Q	K
Template Known Secondary structure		.	.	.	.	.	.	.	.															T	T	.	S			S	S	S		S	S									S	B			.	T	T	S	S	S	G	G	G	G				S	B	.	.	.	.	.	.	.	.	.	.		T	T	S		B	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																	.																						.															.	.	.	.	.	.	.	.	.	.
Template SS confidence
	252									.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.											.	.	.	.	.	.	310

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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