Job Description Q46829 Confidence 75.89% Date Thu Jan 5 12:34:51 GMT 2012 Rank 218 Aligned Residues 81 % Identity 11% Template c3dhuC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:alpha-amylase; PDBTitle: crystal structure of an alpha-amylase from lactobacillus2 plantarum Resolution 2.00 Å

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		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.																					.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Query Sequence		I	K	L	F	A	E	M	G	F	K	C	F	R	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	W	T	R	I	F	P	K	G	D	E	A	Q	P	N	E	E	G	L	K	F	Y	D	D	M	F	D	E	L	L	K	Y	N	I	E	P	V	I	T	L	.	.	S	H
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.							.	.	.	.	.																				.	.
Template Conservation																																														.	.							.	.	.	.	.
Template Sequence		L	Q	R	I	K	D	L	G	T	D	I	L	W	L	L	P	I	N	P	I	G	E	V	N	R	K	G	T	L	G	S	P	Y	A	I	K	D	Y	R	G	I	N	P	E	.	.	Y	G	T	L	A	D	.	.	.	.	.	F	K	A	L	T	D	R	A	H	E	L	G	M	K	V	M	L	D	I	V	Y	N	H
Template Known Secondary structure									T		S								S		B			T	T			T	T	T			T	T	S	B	S		T	T	S			G	G	.	.	G						.	.	.	.	.											T	T										S
Template Predicted Secondary structure																																														.	.							.	.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.						.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.																									150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	E	M	P	L	H	L	V	Q	Q	Y	G	S	W	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	K	V	V	D	F	F	V	R	F	A	E	V	V
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	S	P	D	S	V	L	A	T	E	H	P	E	W	F	Y	H	D	A	D	G	Q	L	T	N	K	V	G	D	W	S	D	V	K	D	L	D	Y	G	H	H	E	L	W	Q	Y	Q	I	D	T	L	L	Y	W
Template Known Secondary structure				T	T	S							G	G	G	B		B		T	T	S		B			S		T	T		T	T				B		T	T		T
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions