Job Description Q46829 Confidence 97.38% Date Thu Jan 5 12:34:51 GMT 2012 Rank 134 Aligned Residues 165 % Identity 17% Template c2xfyA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:beta-amylase; PDBTitle: crystal structure of barley beta-amylase complexed with2 alpha-cyclodextrin Resolution 1.21 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		L	P	G	K	Y	Y	P	N	H	E	A	V	D	F	Y	G	H	Y	K	E	D	I	K	L	F	A	E	M	G	F	K	C	F	R	T	S	I	A	W	T	R	I	F	P	K	G	D	E	A	Q	P	N	E	E	G	L	K	F	Y	D	D	M	F	D	E	L	L	K	Y	N	I	E	P	V	I	T	L	.	S	H
Query Conservation																																																																															.
Alig confidence																																																.								.	.	.																					.
Template Conservation																																																.								.	.	.
Template Sequence		L	P	L	D	A	V	S	V	N	N	R	F	E	K	G	D	E	L	R	A	Q	L	R	K	L	V	E	A	G	V	D	G	V	M	V	D	V	W	W	G	L	V	E	G	K	G	.	P	K	A	Y	D	W	S	.	.	.	A	Y	K	Q	L	F	E	L	V	Q	K	A	G	L	K	L	Q	A	I	M	S	F	H
Template Known Secondary structure				T	T	S	S		T	T	S																		T	T														T		S	S	.	T	T						.	.	.												T	T										S
Template Predicted Secondary structure																																																.								.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.				.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		135												.	.	.	.	140	.	.	.	.	.	.																													.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Query Sequence		F	.	.	.	.	.	.	.	.	.	.	.	E	M	P	L	H	L	V	Q	Q	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	W	T	N	R	K	V	V	D	F	F	V	R	F	A	E	V	V	F	E	R	Y	K	H	K	V	K	Y	.
Query Conservation			.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.										.		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template Conservation																							.
Template Sequence		Q	C	G	G	N	V	G	D	A	V	N	I	P	I	P	Q	W	V	R	D	V	.	G	T	R	D	P	D	I	F	Y	T	D	G	H	G	T	R	N	I	E	Y	L	T	L	G	V	D	N	Q	P	L	F	H	G	R	S	A	V	Q	M	Y	A	D	Y	M	T	S	F	R	E	N	M	K	E	F	L	D	A	G
Template Known Secondary structure			B			S	T	T		S			B		S								.					G	G	G					T	T										G	G	G	T	T				B	T	T	B																							T	T
Template Predicted Secondary structure																							.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	M	T	F	N	E	I	N	N	Q	R	N	W	R	A	P	L	F	G	Y	C	C	S	G	V	V	Y	T	E	H	E	N	P	E	E	T	M	Y	Q	V	L	H	H	Q	F	V	A	S	A	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	V	D	I	E	V	G	L	G	P	A	G	E	M	R	Y	P	S	Y	P	Q	S	H	G	W	S	F	P	G	I	G	E	F	I	C	Y	D	K	Y	L	Q	A	D	F	K	A	A	A	A	A
Template Known Secondary structure											S	G	G	G		S	S						T	T	T	T			T	T									S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions