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Job DescriptionQ46829
Confidence91.20%DateThu Jan 5 12:34:51 GMT 2012
Rank167Aligned Residues89
% Identity15%Templatec2aaaA_
PDB info PDB header:glycosidaseChain: A: PDB Molecule:alpha-amylase; PDBTitle: calcium binding in alpha-amylases: an x-ray diffraction2 study at 2.1 angstroms resolution of two enzymes from3 aspergillus
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   74.....80.........90. ........100.........110.........120.........130..
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Query Sequence  KEDIKLFAEMGFKCFRTS. . . . . . . . . . . . . . . . . . . . . IAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL
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Template Sequence  IDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSN. . FGTADN. . . . . LKSLSDALHARGMYLMVDV
Template Known Secondary structure  TTTT








BTTB
STTS
S
TT..T

.....TTT
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   46...50.........60.........70.........80.........90... ...... 100.........110........
 
   133......140........ .150.........160........
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Query Sequence  . . SHFEMPLHLVQQYGSW. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TNRKVVDFFVRFAEVVFERY
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Template Sequence  VPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNY
Template Known Secondary structure 

SB

BSS
GGG

GGGSBS

SGGGB



B


TT
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SSS
BB
TTS
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   119120.........130.........140.........150.........160.........170.........180.........190........
 
   169
Predicted Secondary structure 
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Query Sequence  K
Query Conservation 
Alig confidence 
Template Conservation 
Template Sequence  S
Template Known Secondary structure  T
Template Predicted Secondary structure 
Template SS confidence 
   199
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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