Job Description P30140 Confidence 99.51% Date Thu Jan 5 11:46:06 GMT 2012 Rank 8 Aligned Residues 202 % Identity 11% Template c3rfaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine Resolution 2.05 Å

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		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.											120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																	.	.																																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.																																					.	.	.	.	.	.	.	.	.	.
Query Sequence		F	G	N	T	V	S	F	Y	V	P	L	Y	L	S	N	.	.	L	C	A	N	D	C	T	Y	C	G	F	S	M	S	N	R	I	K	R	K	T	L	D	E	A	D	I	A	R	E	S	A	A	I	R	E	.	.	.	.	.	.	.	.	.	.	M	G	F	E	H	L	L	L	V	T	G	E	H	Q	A	K	V
Query Conservation																	.	.																																					.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.				.	.															.	.																					.	.	.	.	.	.	.	.	.	.															.
Template Conservation										.	.	.	.																				.	.																																													.
Template Sequence		E	D	D	R	A	T	L	C	.	.	.	.	V	S	S	Q	V	G	C	A	L	E	C	K	F	C	S	T	A	Q	Q	.	.	G	F	N	R	N	L	R	V	S	E	I	I	G	Q	V	W	R	A	A	K	I	V	G	A	A	K	V	T	G	Q	R	P	I	T	N	V	V	M	M	G	M	G	E	P	.	L	L
Template Known Secondary structure			S	S						.	.	.	.								S	S			T	T		G	G	G	T	T	.	.																													S	S		S		S						S	S	S		G	.	G	G
Template Predicted Secondary structure										.	.	.	.																				.	.																																													.
Template SS confidence
		111	.	.	.	.	.	.	.					.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.							.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																			.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.
Query Sequence		G	M	D	Y	F	R	R	H	L	P	A	L	R	E	Q	F	S	.	.	.	.	.	.	S	L	Q	M	E	V	Q	P	L	A	E	T	E	Y	A	E	L	K	Q	L	G	L	D	G	V	M	V	Y	Q	E	T	Y	H	E	A	T	Y	A	R	H	H	L	K	G	K	K	Q	D	F	F	W	R	L	E	T	P	D
Query Conservation																			.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.										.
Template Conservation																																		.
Template Sequence		N	L	N	N	V	V	P	A	M	E	I	M	L	D	D	F	G	F	G	L	S	K	R	R	V	T	L	S	T	S	G	V	.	V	P	A	L	D	K	L	G	D	M	I	D	V	A	L	A	I	S	L	H	A	P	N	D	E	I	R	D	E	I	V	P	I	N	K	K	Y	N	I	E	T	F	L	A	A	V	R
Template Known Secondary structure															S	T	T	T	T				G	G	G						S			.																						S	S								S	G	G	G	G	T	S
Template Predicted Secondary structure																																		.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		211	.	.	.	.	.	.	.						.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.
Query SS confidence										.	.	.	.	.
Query Sequence		R	L	G	R	A	G	I	D	.	.	.	.	.	K	I	G	L	G	A	L	I	G	L	S	D	N	W	R	V	D	S	Y	M	V	A	E	H	L	L	W	L	Q	Q	H	Y	W	Q	S	R	Y	S	V	S	F	P	R	L	R	P	C	T	G	G	I	E	P	A	S	I	M	D	E	R	Q	L	V	Q	T	I	C
Query Conservation										.	.	.	.	.
Alig confidence										.	.	.	.	.																.	.	.	.	.	.	.	.																																.	.
Template Conservation																														.	.	.	.	.	.	.	.																																.	.
Template Sequence		R	Y	L	E	K	S	N	A	N	Q	G	R	V	T	I	E	Y	V	M	L	D	H	V	N	D	G	T	E	.	.	.	.	.	.	.	.	H	A	H	Q	L	A	E	L	L	K	D	T	P	C	K	I	N	L	I	P	W	N	P	F	P	G	A	P	Y	G	R	.	.	S	S	N	S	R	I	D	R	F	S	K
Template Known Secondary structure								T	T	T	T	T									B	T	T	T	T		S			.	.	.	.	.	.	.	.									T	T	T	S													T	T					B	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.																																.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290									.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.			.	.	.	.	.	.	.	.	330	.	.
		286	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		333	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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