Job Description P30140 Confidence 95.77% Date Thu Jan 5 11:46:06 GMT 2012 Rank 33 Aligned Residues 236 % Identity 12% Template c3lotC_ PDB info PDB header:structure genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function (np_070038.1) from2 archaeoglobus fulgidus at 1.89 a resolution Resolution 1.89 Å

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		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.					130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.							.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																											.	.	.	.																									.										.	.	.	.	.	.
Query SS confidence																											.	.	.	.																									.										.	.	.	.	.	.
Query Sequence		L	D	E	A	D	I	A	R	E	S	A	A	I	R	E	M	G	F	E	H	L	L	L	V	T	.	.	.	.	G	E	H	Q	A	K	V	G	M	D	Y	F	R	R	H	L	P	A	L	R	E	Q	F	S	.	S	L	Q	M	E	V	Q	P	L	.	.	.	.	.	.	A	E	T	E	Y	A	E	L	K	Q	L
Query Conservation																											.	.	.	.																									.										.	.	.	.	.	.
Alig confidence																											.	.	.	.					.																				.										.	.	.	.	.	.
Template Conservation																																			.
Template Sequence		V	T	P	D	Q	I	V	E	E	A	V	K	A	A	E	A	G	A	G	X	V	H	I	H	A	R	D	P	K	D	G	R	P	.	T	T	D	V	E	V	F	R	Y	I	C	R	E	I	K	K	Q	S	D	V	V	I	N	V	T	T	G	G	G	G	T	L	G	I	P	V	E	E	R	A	K	V	V	P	A	L
Template Known Secondary structure			S														T	T		S									T	T	T				.																										S	S	T	T	G	G	G	T							T	T
Template Predicted Secondary structure																																			.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.																			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	L	D	G	V	M	V	Y	Q	E	T	Y	H	E	A	T	Y	A	R	H	H	L	K	G	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	D	F	F	W	R	L	E	T	P	D	R	L	G	R	A	G	I	D	K	I	G	L	G	A	L	I	G	L	S	D	N	W	R	V	D
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.					.	.	.	.	.	.	.					.	.
Template Conservation																																																																.					.	.	.	.	.	.	.					.	.
Template Sequence		K	P	E	I	A	T	F	N	X	G	S	X	N	F	A	I	H	P	L	L	K	K	Y	K	E	F	K	Y	D	W	E	P	E	Y	L	E	X	T	R	D	I	V	F	R	N	T	F	K	D	L	E	A	L	S	R	I	F	K	E	N	D	T	.	K	P	E	L	.	.	.	.	.	.	.	E	C	Y	D	.	.
Template Known Secondary structure				S														G	G	G	G	G	T					S	S	T									G	G	G																				T	T		.					.	.	.	.	.	.	.			S	S	.	.
Template Predicted Secondary structure																																																																.					.	.	.	.	.	.	.					.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.								.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		S	Y	M	V	A	E	H	L	L	W	L	Q	Q	H	Y	W	Q	S	R	Y	S	V	S	F	P	R	L	R	P	C	T	G	G	I	E	P	A	S	I	M	D	E	R	Q	L	V	Q	T	I	C	A	F	R	L	L	A	P	E	I	E	L	S	L	S	.	T	R	E	S	P	W	F	R	D	R	V	I	P	L	A
Query Conservation																																																																		.
Alig confidence		.														.														.	.	.	.																																	.															.
Template Conservation		.														.														.	.	.	.																																																.
Template Sequence		.	I	G	Q	I	Y	N	T	A	F	X	F	H	E	.	G	Y	L	E	P	P	L	R	L	Q	F	I	H	.	.	.	.	G	I	L	G	G	I	G	T	A	V	E	D	V	L	F	X	K	Q	T	A	D	R	L	I	G	R	E	N	Y	T	W	S	L	V	G	A	G	R	F	Q	X	P	L	G	T	L	A	.
Template Known Secondary structure		.													T	.	T	S	S		S	S								.	.	.	.			T	T	S																			T		G	G	G									G	G	G									.
Template Predicted Secondary structure		.														.														.	.	.	.																																																.
Template SS confidence
			177	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	N	V	S	A	F	S	K	T	Q	P	G	G	Y	A	D	N	H	P	E	L	E	Q	F	S	P	H	D	D	R	R	P	E	A	V	A	A	A	L	T	A	Q	G	L	Q	P
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	V	I	X	G	G	D	V	R	V	G	L	E	D	S	L	Y	I	E	R	G	K	L	A	K	S	N	A	E	Q	V	E	K	X	V	R	I	V	K	E	L	G	K	R	P
Template Known Secondary structure		.	.	.				T						S	T	T	T		S				T	T				S																T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions