Job Description P30140 Confidence 94.09% Date Thu Jan 5 11:46:06 GMT 2012 Rank 60 Aligned Residues 229 % Identity 9% Template c3eegB_ PDB info PDB header:transferase Chain: B: PDB Molecule:2-isopropylmalate synthase; PDBTitle: crystal structure of a 2-isopropylmalate synthase from2 cytophaga hutchinsonii Resolution 2.78 Å

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		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		C	G	F	S	M	S	N	R	I	K	R	K	T	L	D	E	A	D	I	A	R	E	S	A	A	I	R	E	M	G	F	E	H	L	L	L	V	T	G	E	H	Q	A	K	V	G	M	D	Y	F	R	R	H	L	P	A	L	R	E	Q	F	S	S	L	Q	M	E	V	.	Q	P	L	A	E	T	E	Y	A	E	L
Query Conservation																																																																						.
Alig confidence										.	.	.	.	.																														.	.	.	.	.																						.
Template Conservation										.	.	.	.	.																														.	.	.	.	.
Template Sequence		T	T	L	R	D	G	E	Q	.	.	.	.	.	L	N	T	E	E	K	I	I	V	A	K	A	L	D	E	L	G	V	D	V	I	E	A	G	F	P	V	S	S	.	.	.	.	.	P	G	D	F	N	S	V	V	E	I	T	K	A	V	T	R	P	T	I	C	A	L	T	R	A	K	E	A	D	I	N	I	A
Template Known Secondary structure							S			.	.	.	.	.															T	T	T		S							T	T	T		.	.	.	.	.												T	T			S	S								S
Template Predicted Secondary structure										.	.	.	.	.																														.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.						.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.						.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		171	.					.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.
Query SS confidence				.	.	.	.
Query Sequence		K	Q	.	.	.	.	L	G	L	D	G	V	M	V	Y	Q	E	T	Y	H	E	A	T	Y	A	R	H	H	L	K	G	K	K	Q	D	F	F	W	R	L	E	T	P	D	R	L	G	R	A	G	I	D	K	I	G	L	G	A	L	I	G	L	S	D	N	W	R	V	D	S	Y	M	V	A	E	H	L	L	W	L
Query Conservation				.	.	.	.
Alig confidence				.	.	.	.																									.																					.										.
Template Conservation																																.																					.										.
Template Sequence		G	E	A	L	R	F	A	K	R	S	R	I	H	T	G	I	G	S	S	D	I	H	I	E	H	K	L	R	S	T	.	R	E	N	I	L	E	X	A	V	A	A	V	K	Q	A	K	K	V	V	H	.	E	V	E	F	F	C	E	D	A	.	G	R	A	D	Q	A	F	L	A	R	X	V	E	A	V	I	E	A
Template Known Secondary structure						T	T		S	S										S							T	S	T	T		.		T	T	T	T														S	S	.								S	T	.	T	T	S														T	T
Template Predicted Secondary structure																																.																					.										.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.							300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.					.	.	.	.	.	.
Query SS confidence																																																			.					.	.	.	.	.	.
Query Sequence		Q	Q	H	Y	W	Q	S	R	Y	S	V	S	F	P	R	L	R	P	C	T	G	G	I	E	P	A	S	I	M	D	E	R	Q	L	V	Q	T	I	C	A	F	R	L	L	A	P	E	I	E	.	L	S	L	S	.	.	.	.	.	.	T	R	E	S	P	W	F	R	D	R	V	I	P	L	A	I	N	N	V	S
Query Conservation																																																			.					.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.								.	.	.	.	.	.	.	.	.																												.					.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.								.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	G	A	D	V	V	N	I	.	.	.	.	.	.	.	.	.	P	D	T	T	G	Y	X	L	P	W	Q	Y	G	E	R	I	K	Y	L	X	D	N	V	S	N	I	D	K	A	I	L	S	A	H	C	H	N	D	L	G	L	A	T	A	N	S	L	A	A	L	Q	N	G	A	R	Q	V	E
Template Known Secondary structure		.	.	.	.	.	.	T		S					.	.	.	.	.	.	.	.	.			S	S	S																			T	T	G	G	G	S							B		S	S	S											T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.								.	.	.	.	.	.	.	.	.
Template SS confidence
								162	.	.	.	.	.	.										.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.					.	.	.	.	.	.	360	.
Predicted Secondary structure																																				.	.	.	.
Query SS confidence																																				.	.	.	.
Query Sequence		A	F	S	K	T	Q	P	G	G	Y	A	D	N	H	P	E	L	E	Q	F	S	P	H	D	D	R	R	P	E	A	V	A	A	A	.	.	.	.	L	T	A	Q	G	L	Q	P
Query Conservation																																				.	.	.	.
Alig confidence						.										.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template Conservation						.										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	T	I	N	.	G	I	G	E	R	A	G	N	T	.	.	.	.	.	.	.	.	.	.	.	.	A	L	E	E	V	V	X	A	X	E	C	H	K	E	T	L	G	L	E	T
Template Known Secondary structure			B	G	G	.	G			S	T	T		B		.	.	.	.	.	.	.	.	.	.	.	.	B										T	T
Template Predicted Secondary structure						.										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		227	.	.	230		.	.	.	.	.	.	.	.	.													240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions