Job Description P30140 Confidence 35.16% Date Thu Jan 5 11:46:06 GMT 2012 Rank 311 Aligned Residues 198 % Identity 14% Template c3c52B_ PDB info PDB header:lyase Chain: B: PDB Molecule:fructose-bisphosphate aldolase; PDBTitle: class ii fructose-1,6-bisphosphate aldolase from2 helicobacter pylori in complex with3 phosphoglycolohydroxamic acid, a competitive inhibitor Resolution 2.30 Å

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		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.																			.	.
Query SS confidence																																																											.	.	.																			.	.
Query Sequence		L	D	E	A	D	I	A	R	E	S	A	A	I	R	E	M	G	F	E	H	L	L	L	V	T	G	E	H	Q	A	K	V	G	M	D	Y	F	R	R	H	L	P	A	L	R	E	Q	F	S	S	L	Q	M	E	V	Q	P	.	.	.	L	A	E	T	E	Y	A	E	L	K	Q	L	G	L	D	G	V	M	.	.
Query Conservation																																																											.	.	.																			.	.
Alig confidence																																																											.	.	.																			.	.
Template Conservation
Template Sequence		V	N	F	E	M	L	N	A	I	F	E	A	G	N	E	E	N	S	P	L	F	I	Q	A	S	E	G	A	I	K	Y	M	G	I	D	M	A	V	G	M	V	K	I	M	C	E	R	Y	P	H	I	P	V	A	L	H	L	D	H	G	T	T	F	E	S	C	E	K	A	V	K	A	G	F	T	S	V	M	I	D
Template Known Secondary structure		S	S															T																															S	T	T	S											S											T		S
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		V	Y	Q	E	T	Y	H	E	A	T	Y	A	R	H	H	L	K	G	K	K	Q	D	F	F	W	R	L	E	T	P	D	R	L	G	R	A	G	I	D	K	I	G	L	.	.	G	A	L	I	G	L	S	D	N	W	R	V	D	S	Y	M	V	A	E	H	L	L	W	L	Q	Q	H	Y	W	Q	S	R	Y	S	V
Query Conservation																																													.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.													.					.	.													.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.													.																			.	.	.	.	.	.	.	.
Template Sequence		A	S	H	H	A	F	E	E	N	L	E	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	V	V	K	M	A	H	N	A	G	V	.	S	V	E	A	E	L	G	R	L	M	G	I	L	V	N	P	K	E	.	.	.	.	.	.	.	.	A	E	Q	F	V	K	E	S	Q	V	D	Y	L	A	P
Template Known Secondary structure			T	T	S										.	.	.	.	.	.	.	.	.	.	.	.	.										T	T		.							S												.	.	.	.	.	.	.	.											S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.													.																			.	.	.	.	.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.														.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.									.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.			300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																				.	.	.																									.	.
Query SS confidence																				.	.	.																									.	.
Query Sequence		S	F	P	R	L	R	P	C	T	G	G	I	E	P	A	S	I	M	.	.	.	D	E	R	Q	L	V	Q	T	I	C	A	F	R	L	L	A	P	E	I	E	L	S	L	S	.	.	T	R	E	S	P	W	F	R	D	R	V	I	P	L	A	I	N	N	V	S	A	F	S	K	T	Q	P	G	G	Y	A	D	N
Query Conservation																				.	.	.																									.	.
Alig confidence				.	.	.	.	.	.	.										.	.	.																.	.								.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.																												.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	I	.	.	.	.	.	.	.	G	T	S	H	G	A	F	K	F	K	G	E	P	K	L	D	F	E	R	L	Q	E	V	K	R	L	T	.	.	N	I	P	L	V	L	H	G	A	S	A	I	P	D	N	V	R	K	S	Y	L	D	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	.	.	.	.	.	.	.	S			S	S	S	B			S	S	S																.	.		S						S															T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.																												.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		175	.								.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	P	E	L	E	Q	F	S	P	H	D	D	R	R	P	E	A	V	A	A	A	L	T
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	G	D	L	K	G	S	K	G	V	P	F	E	F	L	Q	E	S	V	K
Template Known Secondary structure		.	.	.	.				T	T		B
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions