Job Description P30140 Confidence 93.45% Date Thu Jan 5 11:46:06 GMT 2012 Rank 63 Aligned Residues 186 % Identity 16% Template c3bolB_ PDB info PDB header:transferase Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+ Resolution 1.85 Å

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		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.		.	.	.	.	.	.	.		180	.	.
Predicted Secondary structure																																																																		.				.								.
Query SS confidence																																																																		.				.								.
Query Sequence		D	E	A	D	I	A	R	E	S	A	A	I	R	E	M	G	F	E	H	L	L	L	V	T	G	E	H	Q	A	K	V	G	M	D	Y	F	R	R	H	L	P	A	L	R	E	Q	F	S	S	L	Q	M	E	V	Q	P	L	A	E	T	E	Y	A	E	.	L	K	Q	.	L	G	L	D	G	V	M	.	V	Y	Q
Query Conservation																																																																		.				.								.
Alig confidence																								.																									.																	.				.								.
Template Conservation																								.																									.
Template Sequence		N	E	E	I	V	I	K	E	A	K	T	Q	V	E	K	G	A	E	V	L	D	V	.	N	F	G	I	E	S	Q	I	D	V	R	Y	V	E	K	I	V	Q	T	L	P	Y	V	S	.	N	V	P	L	S	L	D	I	Q	N	V	D	L	T	E	R	A	L	R	A	Y	P	G	R	S	L	F	N	S	A	K	V
Template Known Secondary structure																T	T		S					.			S	S	G	G	G	S																T	.		S																				S	S									S
Template Predicted Secondary structure																								.																									.
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		183	.	.	.		.	.	.	190	.	.	.											.	.		.	.	.	.	200	.	.	.	.	.	.					.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure						.								.	.	.	.	.	.	.	.	.	.			.												.	.	.	.													.
Query SS confidence						.								.	.	.	.	.	.	.	.	.	.			.												.	.	.	.													.
Query Sequence		E	T	Y	H	.	E	A	T	Y	A	R	H	.	.	.	.	.	.	.	.	.	.	H	L	.	K	G	K	K	Q	D	F	F	W	R	L	.	.	.	.	E	T	P	D	R	L	G	R	A	G	I	D	.	K	I	G	L	G	A	L	I	G	L	S	D	N	W	R	V	D	S	Y	M	V	A	E	H	L	L	W
Query Conservation						.								.	.	.	.	.	.	.	.	.	.			.												.	.	.	.													.
Alig confidence						.								.	.	.	.	.	.	.	.	.	.			.												.	.	.	.													.																.
Template Conservation																																																																						.
Template Sequence		D	E	E	E	L	E	M	K	I	N	L	L	K	K	Y	G	G	T	L	I	V	L	L	M	G	K	D	V	P	K	S	F	E	E	R	K	E	Y	F	E	K	A	L	K	I	L	E	R	H	D	F	S	D	R	V	I	F	D	P	G	V	L	P	L	G	A	E	G	.	K	P	V	E	V	L	K	T	I	E	F
Template Known Secondary structure																								S		S	S	S				S																		T	T		T	T	S										G	G	G	T		.
Template Predicted Secondary structure																																																																						.
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.		.	.	.	.	.	.	490	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.																	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	Q	H	Y	W	Q	S	R	Y	S	V	S	F	P	R	L	R	P	C	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	I	E	P	A	S	I	M	D	E	R	Q	L	V	Q	T	I	C	A	F	R	L	L	A	P	E	I	E	L
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.
Template Sequence		I	S	S	K	.	.	G	F	N	T	T	V	G	L	S	N	L	S	F	L	P	D	R	S	Y	Y	N	T	A	F	L	V	L	G	I	S	K	G	L	S	S	A	I	M	N	P	L	D	E	T	L	M	K	T	L	N	A	T	L	V	I	L	E	K	K	E	L
Template Known Secondary structure					T	.	.	T			B			B	G	G	G	T	T				S															T	T								T	T															T	T	S	S
Template Predicted Secondary structure						.	.
Template SS confidence
		495	.	.	.			.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions