Return to main results Retrieve Phyre Job Id

Job DescriptionP30140
Confidence98.07%DateThu Jan 5 11:46:06 GMT 2012
Rank16Aligned Residues245
% Identity9%Templatec3bleA_
PDB info PDB header:transferaseChain: A: PDB Molecule:citramalate synthase from leptospira interrogans; PDBTitle: crystal structure of the catalytic domain of licms in2 complexed with malonate
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   92.......100.........110..... ....120.........130.........140.........150... ......160........
Predicted Secondary structure 














.














..





Query SS confidence 























.





































. .














Query Sequence  CGFSMSNRIKRKTLDEADIARESA. AIREMGFEHLLLVTGEHQAKVGMDYFRRHLPALREQFS. . SLQMEVQPLAETEYA
Query Conservation 
 
          

 


     .     
   
 
  
  
     
 
   
  

    .. 
 
  
 
  
   
Alig confidence 























.

















.


















..














Template Conservation   




 
          
  
   

   

  



     .                                    
Template Sequence  VTLRDGEQTRGVSFSTSEKLNIAKFLLQKLNVDRVEIASARVS. KGELETVQKIMEWAATEQLTERIEILGFVDGNKTVD
Template Known Secondary structure 
TTSTT



TT

STTS
.TTTT
GGGSSTT
Template Predicted Secondary structure 























.











Template SS confidence 















































































   13......20.........30.........40.........50..... ....60.........70.........80.........90.
 
   169170.........180.........190.........200.........210.........220.........230.........240........
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  ELKQLGLDGVMVYQETYHEATYARHHLKGKKQDFFWRLETPDRLGRAGIDKIGLGALIGLSDNWRVDSYMVAEHLLWLQQ
Query Conservation   






      

        
 
   
     

     
   
   
  
 
 

 
    
    
  
  
  
Alig confidence 















.































.



.
























Template Conservation       
   
      .
          
           
  
   
 . 
  .                         
Template Sequence  WIKDSGAKVLNLLTKG. SLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGL. KINV. YLEDWSNGFRNSPDYVKSLVEHLSK
Template Known Secondary structure  T


.ST


TT
..T
T
Template Predicted Secondary structure 





.






..







Template SS confidence 















































































   92.......100....... ..110.........120.........130......... 140... ......150.........160........
 
   249250.........260.........270.........280.........290.........300.........310.........320........
Predicted Secondary structure 















































Query SS confidence 















































































Query Sequence  HYWQSRYSVSFPRLRPCTGGIEPASIMDERQLVQTICAFRLLAPEIELSLSTRESPWFRDRVIPLAINNVSAFSKTQPGG
Query Conservation          
      
  

          
 

 


 

 

   
  

      
   
  
   
 

     

Alig confidence 
...






.........













































...










Template Conservation   ...
 
 
 
......... 

 
   
      
  
      
 
  
 

  


 

 
 
...  


  

 
Template Sequence  E. . . HIERIFL. . . . . . . . . PDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQA. . . IRAGVKGLHAS
Template Known Secondary structure  S...

S.........
TT




TTS

B
TTS
...TT
SB
Template Predicted Secondary structure 
...


.........















...




Template SS confidence 















































































   169 170...... ...180.........190.........200.........210.........220.. .......230...
 
   329330.........340.........350...... ...360.
Predicted Secondary structure 

















.



Query SS confidence 



























.




Query Sequence  YADNHPELEQFSPHDDRRPEAVAAALTA. QGLQP
Query Conservation                
 

  
    
  . 
  
Alig confidence 








......












.




Template Conservation 
 


  

......
   
 

  
    
   
Template Sequence  INGLGERAG. . . . . . NTPLEALVTTIHDKSNSKT
Template Known Secondary structure  GGG
SSTT
......B
BSS


Template Predicted Secondary structure 








......







Template SS confidence 

































   234.....240.. .......250.........260.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions