Job Description P30140 Confidence 93.91% Date Thu Jan 5 11:46:06 GMT 2012 Rank 62 Aligned Residues 203 % Identity 11% Template c2zyfA_ PDB info PDB header:transferase Chain: A: PDB Molecule:homocitrate synthase; PDBTitle: crystal structure of homocitrate synthase from thermus thermophilus2 complexed with magnesuim ion and alpha-ketoglutarate Resolution 2.15 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		C	G	F	S	M	S	N	R	I	K	R	K	T	L	D	E	A	D	I	A	R	E	S	A	A	I	R	E	M	G	F	E	H	L	L	L	V	T	G	E	H	Q	A	K	V	G	M	D	Y	F	R	R	H	L	P	A	L	R	E	Q	F	S	S	L	Q	M	E	V	Q	P	.	L	A	E	T	E	Y	A	E	L
Query Conservation																																																																								.
Alig confidence																																						.	.	.							.	.																								.
Template Conservation																																						.	.	.							.	.
Template Sequence		S	T	L	R	E	G	E	Q	F	E	K	A	N	F	S	T	Q	D	K	V	E	I	A	K	A	L	D	E	F	G	I	E	Y	I	E	V	.	.	.	T	T	P	V	A	S	.	.	P	Q	S	R	K	D	A	E	V	L	A	S	L	G	L	K	A	K	V	V	T	H	I	Q	C	R	L	D	A	A	K	V	A
Template Known Secondary structure					T	G	G	G	G	S	T	T																			T		S					.	.	.			G	G	G		.	.													S			S	S								S
Template Predicted Secondary structure																																						.	.	.							.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.				.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	L	G	L	D	G	V	M	V	Y	Q	E	T	Y	H	E	A	T	Y	A	R	H	H	L	K	G	K	K	Q	D	F	F	W	R	L	E	T	P	D	R	L	G	R	A	G	I	D	K	I	G	L	G	A	L	I	G	L	S	D	N	W	R	V	D	S	Y	M	V	A	E	H	L	L	W	L	Q	Q	H	Y
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.																	.																													.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.																	.																													.	.	.	.
Template Sequence		V	E	T	G	V	Q	G	I	D	L	L	F	G	T	S	K	G	R	D	I	P	R	I	.	.	.	.	.	.	.	.	I	E	E	A	K	E	V	I	A	Y	I	R	E	A	A	P	.	H	V	E	V	R	F	S	A	E	D	T	F	R	S	E	E	Q	D	L	L	A	V	Y	E	A	V	A	P	.	.	.	.
Template Known Secondary structure				T	T		S								S										.	.	.	.	.	.	.	.																T	.	T	S							S	S	T	T	T	S													G	G	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.																	.																													.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.									.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.					.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																																											.																		.	.	.	.
Query SS confidence																																											.																		.	.	.	.
Query Sequence		W	Q	S	R	Y	S	V	S	F	P	R	L	R	P	C	T	G	G	I	E	P	A	S	I	M	D	E	R	Q	L	V	Q	T	I	C	A	F	R	L	L	A	.	P	E	I	E	L	S	L	S	T	R	E	S	P	W	F	R	D	.	.	.	.	R	V	I	P	L	A	I	N	N	V	S	A	F	S	K
Query Conservation																																											.																		.	.	.	.
Alig confidence		.	.								.	.	.	.	.	.	.	.	.																								.																		.	.	.	.
Template Conservation		.	.								.	.	.	.	.	.	.	.	.
Template Sequence		.	.	Y	V	D	R	V	G	L	.	.	.	.	.	.	.	.	.	A	D	T	V	G	V	A	T	P	R	Q	V	Y	A	L	V	R	E	V	R	R	V	V	G	P	R	V	D	I	E	F	H	G	H	N	D	T	G	C	A	I	A	N	A	Y	E	A	I	E	A	G	A	T	H	V	D	T	T	I	L
Template Known Secondary structure		.	.	G		S					.	.	.	.	.	.	.	.	.			T	T	S																			T	T	T	S							B		T	T	S												T	T							B	G	G
Template Predicted Secondary structure		.	.								.	.	.	.	.	.	.	.	.
Template SS confidence
				157	.	.	160	.	.	.										.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions