Job Description P30140 Confidence 99.63% Date Thu Jan 5 11:46:06 GMT 2012 Rank 7 Aligned Residues 170 % Identity 12% Template c2qgqF_ PDB info PDB header:structural genomics, unknown function Chain: F: PDB Molecule:protein tm_1862; PDBTitle: crystal structure of tm_1862 from thermotoga maritima.2 northeast structural genomics consortium target vr77 Resolution 2.00 Å

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		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																																.	.	.	.																													.	.
Query SS confidence																																																.	.	.	.																													.	.
Query Sequence		C	T	Y	C	G	F	S	M	S	N	R	I	K	R	K	T	L	D	E	A	D	I	A	R	E	S	A	A	I	R	E	M	G	F	E	H	L	L	L	V	T	G	E	H	Q	A	.	.	.	.	K	V	G	M	D	Y	F	R	R	H	L	P	A	L	R	E	Q	F	S	S	L	Q	M	E	V	Q	P	L	.	.
Query Conservation																																																.	.	.	.																													.	.
Alig confidence																		.																														.	.	.	.																													.	.
Template Conservation																		.
Template Sequence		R	P	Y	A	Y	V	K	I	S	D	G	S	L	R	S	R	.	S	I	E	D	I	T	R	E	V	E	D	L	L	K	E	G	K	K	E	I	I	L	V	A	Q	D	T	T	S	Y	G	I	D	L	Y	R	K	Q	A	L	P	D	L	L	R	R	L	N	S	L	N	G	E	F	W	I	R	V	X	Y	L	H	P
Template Known Secondary structure			S							B						B		.															T	T									S		G	G	G	T	T	T	T	T	T	S	S												T	S	S	S	S										G
Template Predicted Secondary structure																		.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
					163	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure		.	.	.													.	.																																										.	.
Query SS confidence		.	.	.													.	.																																										.	.
Query Sequence		.	.	.	A	E	T	E	Y	A	E	L	K	Q	L	G	.	.	L	D	G	V	M	V	Y	Q	E	T	Y	H	E	A	T	Y	A	R	H	H	L	K	G	K	K	Q	D	F	F	W	R	L	E	T	P	D	R	L	G	R	A	.	.	G	I	D	K	I	G	L	G	A	L	I	G	L	S	D	N	W	R	V	D
Query Conservation		.	.	.													.	.																																										.	.
Alig confidence		.	.	.													.	.																				.	.	.																				.	.			.
Template Conservation																																						.	.	.																								.
Template Sequence		D	H	L	T	E	E	I	I	S	A	X	L	E	L	D	K	V	V	K	Y	F	D	V	P	V	Q	H	G	S	D	K	I	L	K	L	X	.	.	.	G	R	T	K	S	S	E	E	L	K	K	X	L	S	S	I	R	E	R	F	P	D	A	.	V	L	R	T	S	I	I	V	G	F	P	G	E	T	E	E	D
Template Known Secondary structure		G	G													T	T	B		S							B		S									.	.	.	T			S																	T	T		.									S		T	T
Template Predicted Secondary structure																																						.	.	.																								.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.				.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	M	V	A	E	H	L	L	W	L	Q	Q	H	Y	W	Q	S	R	Y	S	V	S	F	P	R	L	R	P	C	T	G	G	I
Query Conservation
Alig confidence													.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.
Template Sequence		F	E	E	L	K	Q	F	V	E	E	I	.	.	.	.	.	.	Q	F	D	K	L	G	A	F	V	Y	S	D	K	V	D	P	E
Template Known Secondary structure													.	.	.	.	.	.			S
Template Predicted Secondary structure													.	.	.	.	.	.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.							.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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