Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFZ3
Confidence100.00%DateThu Jan 5 11:27:39 GMT 2012
Rank2Aligned Residues118
% Identity57%Templated1ou9a_
SCOP infoSspB-like SspB-like Stringent starvation protein B, SspB
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60.........70.........80....
Predicted Secondary structure 




































Query SS confidence 















































































Query Sequence  QLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVS
Query Conservation   
    





 
 
  

  

 
 

     
 

   
 
  





  
   
 
  
 
 
 


 
    
 
Alig confidence 















































































Template Conservation   
   






 
 
  

  

 
 


    
 

   
 

 






 
   
 
 

 


 


 


  
 
Template Sequence  KSSPKRPYLLRAYYDWLVDNSFTPYLVVDATYLGVNVPVEYVKDGQIVLNLSASATGNLQLTNDFIQFNARFKGVSRELY
Template Known Secondary structure 



STT

TTSTT
BS
GGG
BTT

TTT

SSTT
Template Predicted Secondary structure 
































Template SS confidence 















































































   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   85....90.........100.........110.........120..
Predicted Secondary structure 























Query SS confidence 





































Query Sequence  VPLAAVLAIYARENGAGTMFEPEAAYDEDTSIMNDEEA
Query Conservation 

  

 





 
 

 
  
    
          
Alig confidence 





































Template Conservation 

  

 





 
 

 
  
    
         
Template Sequence  IPXGAALAIYARENGDGVXFEPEEIYDELNIEPDTEQP
Template Known Secondary structure  GGGTTT





TT





S

Template Predicted Secondary structure 






























Template SS confidence 





































   84.....90.........100.........110.........120.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions