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Job DescriptionP37340
Confidence4.54%DateThu Jan 5 11:55:21 GMT 2012
Rank46Aligned Residues309
% Identity9%Templated3b60a2
SCOP infoABC transporter transmembrane region ABC transporter transmembrane region ABC transporter transmembrane region
Resolution3.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGR
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Template Sequence  FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYC. . . .
Template Known Secondary structure  GGGTSSTTSTTS....
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   13......20.........30.........40.........50.........60.........70.........80........
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  RERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPG
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Template Sequence  ISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLS
Template Known Secondary structure  T

STS
TTTT
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   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  MVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQ
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Template Conservation 
                                       
       

                              
Template Sequence  IILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS
Template Known Secondary structure  TT
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Query Sequence  LGLPIALALFFEVTLFAVVALLVSPL. . GIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQT
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Template Sequence  SISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILD
Template Known Secondary structure  SSSTTSSS
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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