Job Description P37340 Confidence 3.94% Date Thu Jan 5 11:55:21 GMT 2012 Rank 60 Aligned Residues 267 % Identity 11% Template c3dl8H_ PDB info PDB header:protein transport Chain: H: PDB Molecule:preprotein translocase subunit secy; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca Resolution 7.50 Å

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		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	R	R	E	R	I	A	H	Q	V	R	Q	G	F	W	L	A	G	F	V	S	V	L	I	M	L	V	L	W	N	A	G	Y	I	I	R	S	M	E	N	I	D	P	A	L	A	D	K	A	V	G	Y	L	R	A	L	L	W	G	A	P	G	Y	L	F	F	Q	V	A	R	N	Q	C	E	G	L	A	K	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	G	D	Y	G	R	Y	K	I	N	E	Y	T	K	Y	L	T	L	F	V	A	T	V	Q	S	L	G	I	A	F	W	I	R	G	Q	V	S	P	K	G	I	P	V	V	E	N	P	G	I	S	F	I	L	I	T	V	L	T	L	V	A	G	T	M	F	L	V	W	I	A	D	R	I	T	E	K	G	I	G
Template Known Secondary structure		S	S	S																																	S		S	S						S	S	S	T	T	T	T																											T		T
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.						220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																																																.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.
Query Sequence		K	P	G	M	V	M	G	F	I	G	L	L	V	N	I	P	V	N	Y	I	F	I	Y	G	H	F	G	M	P	E	L	G	G	V	G	C	G	V	A	T	A	A	V	Y	W	V	M	F	L	A	M	V	S	Y	I	K	R	A	R	S	M	R	.	.	.	.	.	D	I	R	N	E	K	G	T	A	K	P	D	P
Query Conservation																																																																.	.	.	.	.
Alig confidence																																																																.	.	.	.	.
Template Conservation
Template Sequence		N	G	A	S	L	I	I	F	A	G	I	V	A	N	F	P	N	A	V	I	Q	F	Y	E	K	V	K	T	G	D	I	G	P	L	T	L	L	L	I	I	A	L	I	I	A	I	I	V	G	I	V	Y	V	Q	E	A	E	R	R	I	P	I	Q	Y	P	G	R	Q	V	G	R	Q	L	Y	A	G	R	K	T	Y
Template Known Secondary structure		T														T	T	T	T	S	S					S	S	S		S	S	S		T																		T		S										B		S	S	S		B
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.								.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.
Query Sequence		A	V	M	K	R	L	I	Q	L	G	L	P	I	A	L	A	L	F	F	E	V	T	L	F	A	V	V	A	L	L	V	S	.	.	.	.	.	.	.	P	L	G	I	V	D	V	A	G	H	Q	I	A	L	N	F	S	S	L	M	F	V	L	P	M	S	L	A	A	A	V	T	I	R	V	G	Y	R	L	G	Q
Query Conservation																																		.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	I	K	I	N	P	A	G	V	I	P	I	I	F	A	Q	A	L	L	L	I	P	S	T	L	L	N	F	V	Q	N	P	F	I	K	V	I	A	D	M	F	Q	P	G	A	I	F	Y	N	F	L	Y	V	T	F	I	V	F	F	T	Y	F	Y	T	A	V	L	I	N	P	V	E	L	A	E	N	L	H	K
Template Known Secondary structure											S	S																		S		S	S					T	T	T	T	T	T	T	T	T																					T		T	T								T
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
										306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	G	S	T	L	D	A	Q	T	A	A	R	T	G	L	M	V	G	V	C	M	A	T	L	T	A	I	F	T	V	S	L	R	E	Q	I	A	L	L	Y
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	A	F	I	P	G	V	R	P	G	Q	D	T	V	K	Y	L	E	R	I	I	N	R	L	I	F	F	G	A	L	F	L	S	V	I	A	L	I	P	I	L	I	S	V	W	F
Template Known Secondary structure			B	S	S	S	B																																						T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions