Job Description P0ADV5 Confidence 100.00% Date Thu Jan 5 11:21:55 GMT 2012 Rank 16 Aligned Residues 324 % Identity 17% Template c3b9nB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:alkane monoxygenase; PDBTitle: crystal structure of long-chain alkane monooxygenase (lada) Resolution 2.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.												.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.																.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	T	D	K	T	I	A	F	S	L	L	D	L	A	P	I	.	.	.	.	.	.	.	.	.	.	.	P	E	G	S	S	A	R	E	A	F	S	H	S	L	D	L	A	R	L	A	E	K	R	G	Y	H	R	Y	W	L	A	E	H	H	N	M	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.												.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.
Template Sequence		M	T	K	K	.	I	H	I	N	A	F	E	M	N	C	V	G	H	I	A	H	G	L	W	R	H	P	E	N	Q	R	H	R	Y	T	D	L	N	Y	W	T	E	L	A	Q	L	L	E	K	G	K	F	D	A	L	F	L	A	D	V	V	G	I	Y	D	V	Y	R	Q	S	R	D	T	A	V	R	E	A	V	Q
Template Known Secondary structure						.									S	B	S	B	S	S	S	T	T	G	G	G	S	T	T			G	G	G	T	T															T	T		S								S	S					G	G	G	S	S						T	T	B	S
Template Predicted Secondary structure						.
Template SS confidence
		1	.	.	.		.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.					.	.	.	.	130
Predicted Secondary structure																																																																									.	.	.	.
Query SS confidence																																																																									.	.	.	.
Query Sequence		I	A	S	A	A	T	S	V	L	I	G	Y	L	A	A	N	T	T	T	L	H	L	G	S	G	G	V	M	L	P	N	H	S	P	L	V	I	A	E	Q	F	G	T	L	N	T	L	Y	P	G	R	I	D	L	G	L	G	R	A	P	G	S	D	Q	R	T	M	M	A	L	R	.	.	.	.	R	H	M	S	G
Query Conservation																																																																									.	.	.	.
Alig confidence																														.																														.	.												.	.	.	.
Template Conservation																														.																														.	.
Template Sequence		I	P	V	N	D	P	L	M	L	I	S	A	M	A	Y	V	T	K	H	L	A	F	A	V	T	F	S	T	.	T	Y	E	H	P	Y	G	H	A	R	R	M	S	T	L	D	H	L	T	K	G	R	I	A	W	N	V	V	T	.	.	S	H	L	P	S	A	D	K	N	F	G	I	K	K	I	L	E	H	D	E
Template Known Secondary structure			S	B			S	G	G	G									S	S									S	.	S	S	S																T	T	S									.	.										T	T		S	S
Template Predicted Secondary structure																														.																														.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.																							.	150	.	.	.	.	.	.	.	.										.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Query Sequence		D	I	D	N	F	P	R	D	V	A	E	L	V	D	W	F	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	P	N	P	H	V	R	P	V	.	.	.	.	.	.	.	.	.	P	G	Y	G	E	K	I	P	V	W	L	L	G	S	S	L	Y	S	A	Q	L
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	Y	D	L	A	D	E	Y	L	E	V	C	Y	K	L	W	E	G	S	W	E	D	N	A	V	I	R	D	I	E	N	N	I	Y	T	D	P	S	K	V	H	E	I	N	H	S	G	K	Y	F	E	V	P	G	P	H	L	C	E	P	S	P	Q	R	T	P	V	I	Y	Q	A	G	M	S	E	R	G	R	E	F
Template Known Secondary structure																			T	S	B		T	T						T	T	T	T					G	G	G	B								S	S								S	S				T	T	S	S									S
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.												.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	Q	L	G	L	P	F	A	F	A	S	H	F	A	P	D	M	L	F	Q	A	L	H	L	Y	R	S	N	F	K	P	S	A	R	L	E	K	P	Y	A	M	V	C	I	N	I	I	A	A	D	S	N	R	D	A	E	F	L	F	T	S	M	Q	.	.	.	.	.	.	.	.	.	.	.	Q	A	F	V	K
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	K	H	A	E	C	V	F	L	G	G	K	D	V	E	T	L	K	F	F	V	D	D	I	R	K	R	A	K	K	Y	G	R	N	P	D	H	I	K	M	F	A	G	I	C	V	I	V	G	K	T	H	D	E	A	M	E	K	L	N	S	F	Q	K	Y	W	S	L	E	G	H	L	A	H	Y	G	G	G	T
Template Known Secondary structure							S						B	S	S															T	G	G	G	T			G	G	G													S	S													T	T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		L	R	R	G	E	T	G	Q	L	P	P	P	I	Q	N	M	D	Q	F	W	S	P	S	E	Q	Y	G	V	Q	Q	A	L	S	M	S	L	V	G	D	K	A	K	V	R	H	G	L	Q	S	I	L	R	E	T	D	A	D	E	I	M	V	N	G	Q	I	F	D	H	Q	A	R	L	H	S	F	E	L	A	M	.
Query Conservation																																																																																	.
Alig confidence																																																																					.	.	.	.	.								.
Template Conservation																																																																					.	.	.	.	.
Template Sequence		G	Y	D	L	S	K	Y	S	S	N	D	Y	I	G	S	I	S	V	G	E	I	I	N	N	M	S	K	L	D	G	K	W	F	K	L	S	V	G	T	P	K	K	V	A	D	E	M	Q	Y	L	V	E	E	A	G	I	D	G	F	N	L	V	Q	Y	V	S	P	.	.	.	.	.	G	T	F	V	D	F	I	E
Template Known Secondary structure					T	T	S	S		T	T		B	S	S	S	S	B									T	S	G	G	G	S	S	B						S																									S	S	T	T	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.						.	.	.	.	.	.	390	.
		328	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	K	E	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	V	P	E	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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