 |
Job Description | P00805 | Confidence | 29.94% | Date | Thu Jan 5 10:56:53 GMT 2012 |
Rank | 100 | Aligned Residues | 82 |
% Identity | 16% | Template | d2nu7b1 |
SCOP info | Flavodoxin-like
| Succinyl-CoA synthetase domains
| Succinyl-CoA synthetase domains
|
Resolution | 2.20 |
|
 |
  |   |
248 | . | 250 | . | . | . | . | . | |
. | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | |
|
|
. | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  | . |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | P | A | K | A | L | V | D | . |
A | G | Y | D | G | I | V | S | A | G | V | G | N | G | N | L | Y | K | S | V | F | D | T | L | A | T | A | A | K | . |
. |
. |
T | G | T | A | V | V | R | S | S | R | V | P | T | G | A | T | T | Q | D | A | E | V | D | D | A | K | Y | G | F | V | A | S | G | T | L | N | P | Q | K |
Query Conservation |   |
  |   |
|   |   |   |   |   | . |   |
|   |   |
|
|
|
|   |   |   |
|   |
|
|   |
|   |   |   |   |   |   |
|   |   |
|   |   | . | . | . |   |
|
|   |
|
|   |   |
|
|   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|   |
|
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |
|
|   |
|
|   |
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |
|
|
|   |   | . | . | . |   |
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|
|
|   |   |
|   |   |
|   |
Template Sequence |   |
E | A | F | K | I | I | L | S | D | D | K | V | K | A | V | L | V | N | I | F | G | G | I | V | R | C | D | L | I | A | D | G | I | I | G | A | V | A | E | V | G | V | N | V | P | V | V | V | R | . |
. |
. |
L | E | G | N | N | A | E | L | G | A | K | K | L | A | D | S | G | L | N | I | I | A | A | K | G | L | T | D |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | S | T | T |
|
|  |  |  |  |  |  |  | S |
| S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
| S |
|  |  |  |  | . | . | . |  |  | S | T | T |  |  |  |  |  |  |  |  |  |  |  |
| S | S |  |  |  |
| S | S |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  | . | . | . |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | |
|
|
. | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . |
  |
  |   |
324 | . | . | . | . | . | 330 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | R | V | L | L | Q | L | A | L |
Query Conservation |   |
|   |   |
|
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |   |   |   |
|
Template Sequence |   |
A | A | Q | Q | V | V | A | A | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
  |   |
377 | . | . | 380 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|