Job Description P00805 Confidence 100.00% Date Thu Jan 5 10:56:53 GMT 2012 Rank 7 Aligned Residues 324 % Identity 30% Template c2d6fA_ PDB info PDB header:ligase/rna Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) Resolution 3.15 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	A	A	L	A	L	P	N	I	T	I	L	A	T	G	G	T	I	A	G	G	G	D	S	A	T	K	S	N	Y	T	V	G	K	V	G	V	E	N	L	V	N	A	V	P	Q	L	K	D	I	A	N	V	K	G	E	Q	V	V	N	I	G	S	Q	D	M	N	D	N	V	W	L	T	L	A	K	K	I	N
Query Conservation
Alig confidence																													.	.
Template Conservation																													.	.
Template Sequence		A	A	E	D	P	E	L	P	D	V	S	I	I	S	T	G	G	T	V	A	S	I	I	D	Y	R	T	.	.	G	A	V	H	P	A	F	T	A	D	D	L	L	R	A	N	P	E	L	L	D	I	A	N	I	R	G	R	A	V	F	N	I	L	S	E	N	M	K	P	E	Y	W	V	E	T	A	R	A	V	Y
Template Known Secondary structure						S	S	S								S	S									T	T	T	.	.	S								T	T							G	G	G	G	G	T													G	G	G
Template Predicted Secondary structure																													.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		97	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		T	D	C	D	K	.	T	D	G	F	V	I	T	H	G	T	D	T	M	E	E	T	A	Y	F	L	D	L	T	V	K	C	D	K	P	V	V	M	V	G	A	M	R	P	S	T	S	M	S	A	D	G	P	F	N	L	Y	N	A	V	V	T	A	A	D	K	A	S	A	N	R	G	V	L	V	V	M	N	D	T
Query Conservation							.
Alig confidence							.																																																															.	.	.
Template Conservation																																																																						.	.	.
Template Sequence		G	E	I	K	D	G	A	D	G	V	V	V	A	H	G	T	D	T	M	H	Y	T	S	A	A	L	S	F	M	L	R	T	P	V	P	V	V	F	T	G	A	Q	R	S	S	D	R	P	S	S	D	A	S	L	N	I	Q	C	S	V	R	A	A	T	S	E	I	A	.	.	.	E	V	T	V	C	M	H	A	T
Template Known Secondary structure						T	T		S								T	T	T															S	S								S	S		T	T	S	T	T		T														S	S			.	.	.	S							S	S
Template Predicted Secondary structure																																																																						.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.				230	.	.	.	.	.	.	.	.
									176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	V	L	D	G	R	D	V	T	K	T	N	T	T	D	V	A	T	F	K	S	V	N	Y	G	P	L	G	Y	I	H	N	G	K	I	D	Y	Q	R	T	P	A	R	K	H	T	S	D	T	P	F	D	V	S	K	L	N	E	L	P	K	V	G	I	V	Y	N	Y	A	N	A	S	D	L
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																																									.	.
Template Conservation																																																																	.	.
Template Sequence		M	D	D	L	S	C	H	L	H	R	G	V	K	V	R	K	M	H	T	S	R	R	D	T	F	R	S	M	N	A	L	P	L	A	E	V	T	P	D	G	I	K	I	L	E	E	N	Y	R	K	R	G	S	D	E	L	E	L	S	D	R	V	E	.	.	E	R	V	A	F	I	K	S	Y	P	G	I	S	P	D
Template Known Secondary structure		S	S	S	S							G	G	G					S	S	S		T	T					S	S	S			S					T	T												S	T	T	S										.	.										T	T
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.				.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence		P	A	K	A	L	V	D	A	G	Y	D	G	I	V	S	A	G	V	G	N	G	N	L	Y	K	S	V	F	D	T	L	A	T	A	A	K	T	G	T	A	V	V	R	S	S	R	V	P	T	G	A	T	T	Q	D	A	E	.	.	.	V	D	D	A	K	Y	G	F	V	A	S	G	T	L	N	P	Q	K	A	R
Query Conservation																																																											.	.	.
Alig confidence																																																											.	.	.
Template Conservation
Template Sequence		I	I	K	W	H	L	D	E	G	Y	R	G	I	V	I	E	G	T	G	L	G	H	C	P	D	T	L	I	P	V	I	G	E	A	H	D	M	G	V	P	V	A	M	T	S	Q	C	L	N	G	R	V	N	M	N	V	Y	S	T	G	R	R	L	L	Q	A	G	V	I	P	C	D	D	M	L	P	E	V	A	Y
Template Known Secondary structure									T	T		S							B	T	T	T	B			G	G	G										T	T								T	T		S	S				T	T	S	S									T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	L	Q	L	A	L	T	Q	T	K	D	P	Q	Q	I	Q	Q	I	F	N	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	M	C	W	V	L	G	Q	T	D	D	P	E	M	A	R	E	M	M	R	E
Template Known Secondary structure								T	T	T													S
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions