Job Description P00805 Confidence 100.00% Date Thu Jan 5 10:56:53 GMT 2012 Rank 8 Aligned Residues 323 % Identity 29% Template c1zq1B_ PDB info PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi Resolution 3.00 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		A	L	P	N	I	T	I	L	A	T	G	G	T	I	A	G	G	G	D	S	A	T	K	S	N	Y	T	V	G	K	V	G	V	E	N	L	V	N	A	V	P	Q	L	K	D	I	A	N	V	K	G	E	Q	V	V	N	I	G	S	Q	D	M	N	D	N	V	W	L	T	L	A	K	K	I	N	T	D	C	D	.
Query Conservation																																																																																	.
Alig confidence																								.	.																																																								.
Template Conservation																								.	.
Template Sequence		G	L	P	E	V	T	I	I	G	T	G	G	T	I	A	S	R	I	D	Y	E	T	.	.	G	A	V	Y	P	A	F	T	A	E	E	L	A	K	A	L	P	E	I	F	E	V	A	N	V	K	P	K	L	L	F	N	I	F	S	E	D	X	K	P	K	H	W	V	K	I	A	H	E	V	A	K	A	L	N	S
Template Known Secondary structure		T									S	S									T	T	T	.	.	T																G	G	G	G	G	T	S												G	G	G
Template Predicted Secondary structure																								.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.					.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																											.																																									.	.	.	.
Query SS confidence																											.																																									.	.	.	.
Query Sequence		K	T	D	G	F	V	I	T	H	G	T	D	T	M	E	E	T	A	Y	F	L	D	L	T	V	.	K	C	D	K	P	V	V	M	V	G	A	M	R	P	S	T	S	M	S	A	D	G	P	F	N	L	Y	N	A	V	V	T	A	A	D	K	A	S	A	N	.	.	.	.	R	G	V	L	V	V	M	N	D	T
Query Conservation																											.																																									.	.	.	.
Alig confidence																											.																																									.	.	.	.
Template Conservation
Template Sequence		G	D	Y	G	V	V	V	A	H	G	T	D	T	X	G	Y	T	A	A	A	L	S	F	X	L	R	N	L	G	K	P	V	V	L	V	G	A	Q	R	S	S	D	R	P	S	S	D	A	A	X	N	L	I	C	S	V	R	X	A	T	S	E	V	A	E	V	X	V	V	X	H	G	E	T	G	D	T	Y	C	L
Template Known Secondary structure		T		S								T	T	T												S	B	T			S								S	S		T	T	S	T	T		S													T	S	S	B		S							S	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	D	G	R	D	V	T	K	T	N	T	T	D	V	A	T	F	K	S	V	N	Y	G	P	L	G	Y	I	H	N	G	K	I	D	Y	Q	R	T	P	A	R	K	H	T	S	D	T	P	F	D	V	S	K	L	N	E	L	P	K	V	G	I	V	Y	N	Y	A	N	A	S	D	L	P	A	K	A	L	V	D
Query Conservation
Alig confidence																																																								.
Template Conservation																																																								.
Template Sequence		A	H	R	G	T	K	V	R	K	X	H	T	S	R	R	D	A	F	R	S	I	N	D	V	P	I	A	K	I	W	P	N	G	E	I	E	F	L	R	K	D	Y	R	K	R	S	D	E	E	V	E	V	D	D	.	K	I	E	E	K	V	A	L	V	K	V	Y	P	G	I	S	S	E	I	I	D	F	L	V	D
Template Known Secondary structure					T	T	S					S	S	S		G	G	G				S	S	S			S					T	T	S					S		S		S		B			S				B				.													S	S			T
Template Predicted Secondary structure																																																								.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.				.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence		A	G	Y	D	G	I	V	S	A	G	V	G	N	G	N	L	Y	K	S	V	F	D	T	L	A	T	A	A	K	T	G	T	A	V	V	R	S	S	R	V	P	T	G	A	T	T	Q	D	A	E	.	.	.	V	D	D	A	K	Y	G	F	V	A	S	G	T	L	N	P	Q	K	A	R	V	L	L	Q	L	A	L
Query Conservation																																																				.	.	.
Alig confidence																																																				.	.	.
Template Conservation
Template Sequence		K	G	Y	K	G	I	V	I	E	G	T	G	L	G	H	T	P	N	D	I	I	P	S	I	E	R	A	V	E	E	G	V	A	V	C	X	T	S	Q	C	I	Y	G	R	V	N	L	N	V	Y	S	T	G	R	K	L	L	K	A	G	V	I	P	C	E	D	X	L	P	E	T	A	Y	V	K	L	X	W	V	L
Template Known Secondary structure		T	T		S							B	T	T	T	B			T	T	T										T	T								S	S	S	S	S				T	T	S	S									T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	T	K	D	P	Q	Q	I	Q	Q	I	F	N	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	H	T	Q	N	L	E	E	V	R	K	X	X	L	T
Template Known Secondary structure		T	T												T	S
Template Predicted Secondary structure
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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