Job Description P21599 Confidence 100.00% Date Thu Jan 5 11:38:29 GMT 2012 Rank 2 Aligned Residues 469 % Identity 40% Template c3t07D_ PDB info PDB header:transferase/transferase inhibitor Chain: D: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of s. aureus pyruvate kinase in complex with a2 naturally occurring bis-indole alkaloid Resolution 3.30 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	R	T	K	I	V	T	T	L	G	P	A	T	D	R	D	N	N	L	E	K	V	I	A	A	G	A	N	V	V	R	M	N	F	S	H	G	S	P	E	D	H	K	M	R	A	D	K	V	R	E	I	A	A	K	L	G	R	H	V	A	I	L	G	D	L	Q	G	P	K	I	R	V	S	T	F	K	E	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	R	K	T	K	I	V	C	T	I	G	P	A	S	E	S	E	E	M	I	E	K	L	I	N	A	G	M	N	V	A	R	L	N	F	S	H	G	S	H	E	E	H	K	G	R	I	D	T	I	R	K	V	A	K	R	L	D	K	I	V	A	I	L	L	D	T	K	G	P	E	I	R	T	H	N	M	K	D	G
Template Known Secondary structure					S								G	G	G		S											T								T	T	S	S																				T															B	B				T	T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		K	V	F	L	N	I	G	D	K	F	L	L	D	A	N	L	G	K	G	E	G	D	K	E	K	V	G	I	D	Y	K	G	L	P	A	D	V	V	P	G	D	I	L	L	L	D	D	G	R	V	Q	L	K	V	L	E	V	Q	.	.	G	M	K	V	F	T	E	V	T	V	G	G	P	L	S	N	N	K	G	I
Query Conservation																																																												.	.
Alig confidence																	.	.																																										.	.
Template Conservation																	.	.
Template Sequence		I	I	E	L	E	R	G	N	E	V	I	V	S	M	N	.	.	E	V	E	G	T	P	E	K	F	S	V	T	Y	E	N	L	I	N	D	V	Q	V	G	S	Y	I	L	L	D	D	G	L	I	E	L	Q	V	K	D	I	D	H	A	K	K	E	V	K	C	D	I	L	N	S	G	E	L	K	N	K	K	G	V
Template Known Secondary structure							T	T							S	S	.	.						S	S				B	S		T	T							T	T						T	T	T	T										T	T	T	T								S						S	S		B
Template Predicted Secondary structure																	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	L	G	G	G	L	S	A	E	A	L	T	E	K	D	K	A	D	I	K	T	A	A	L	I	G	V	D	Y	L	A	V	S	F	P	R	C	G	E	D	L	N	Y	A	R	R	L	A	R	D	A	G	C	D	A	K	I	V	A	K	V	E	R	A	E	A	V	C	S	Q	D	A	M	D	D	I	I	L	A
Query Conservation
Alig confidence																																																																						.	.	.
Template Conservation																																																																						.	.	.
Template Sequence		N	L	P	G	V	R	V	S	L	P	G	I	T	E	K	D	A	E	D	I	R	F	G	I	K	E	N	V	D	F	I	A	A	S	F	V	R	R	P	S	D	V	L	E	I	R	E	I	L	E	E	Q	K	A	N	I	S	V	F	P	K	I	E	N	Q	E	G	I	.	.	.	D	N	I	E	E	I	L	E	V
Template Known Secondary structure				S	S	S						S	S														T	T		S					T	T			S															T											S					.	.	.		T							T
Template Predicted Secondary structure																																																																						.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.	.	230	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	V	V	M	V	A	R	G	D	L	G	V	E	I	G	D	P	E	L	V	G	I	Q	K	A	L	I	R	R	A	R	Q	L	N	R	A	V	I	T	A	T	Q	M	M	E	S	M	I	T	N	P	M	P	T	R	A	E	V	M	D	V	A	N	A	V	L	D	G	T	D	A	V	M	L	S	A	E	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	D	G	L	M	V	A	R	G	D	M	G	V	E	I	P	P	E	K	V	P	M	V	Q	K	D	L	I	R	Q	C	N	K	L	G	K	P	V	I	T	A	T	Q	M	L	D	S	M	Q	R	N	P	R	A	T	R	A	E	A	S	D	V	A	N	A	I	Y	D	G	T	D	A	V	M	L	S	G	E	T	A
Template Known Secondary structure			S													S		G	G	G														T	T	T							S	S	S	S	G	G	G	G	T	S	S	S																T		S					S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		A	G	Q	Y	P	S	E	T	V	A	A	M	A	R	V	C	L	G	A	E	K	I	P	S	I	N	V	S	K	.	H	R	L	D	V	Q	F	D	N	V	E	E	A	I	A	M	S	A	M	Y	A	A	N	H	L	K	G	V	T	A	I	I	T	M	T	E	S	G	R	T	A	L	M	T	S	R	I	S	S	G
Query Conservation																															.
Alig confidence																															.																												.
Template Conservation																																																											.
Template Sequence		A	G	L	Y	P	E	E	A	V	K	T	M	R	N	I	A	V	S	A	E	A	A	Q	D	Y	K	K	L	L	S	D	R	T	K	L	V	E	T	S	L	V	N	A	I	G	I	S	V	A	H	T	A	L	N	L	N	V	.	K	A	I	V	A	A	T	E	S	G	S	T	A	R	T	I	S	K	Y	R	P	H
Template Known Secondary structure		T		S																			T														S				T	T	T														T		.	S							S	S	S								T	T			S
Template Predicted Secondary structure																																																											.
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.		.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	I	F	A	M	S	R	H	E	R	T	L	N	L	T	A	L	Y	R	G	V	T	P	V	H	F	D	S	A	N	D	G	V	A	A	A	S	E	A	V	N	L	L	R	D	K	G	Y	L	M	S	G	D	L	V	I	V	T	Q	G	D	V	M	S	T	V	G	S	T	N	T	T	R	I	L	T	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	D	I	I	A	V	T	P	S	E	E	T	A	R	Q	C	S	I	V	W	G	V	Q	P	V	V	K	K	G	R	K	S	T	D	A	L	L	N	N	A	V	A	T	A	V	E	T	G	R	V	T	N	G	D	L	I	I	I	T	A	G	V	P	T	G	E	T	G	T	T	N	M	M	K	I	H	L	V
Template Known Secondary structure		S							S									T	T	S	T	T											S																S	S			T	T									S	S	S	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.