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Job DescriptionP21599
Confidence100.00%DateThu Jan 5 11:38:29 GMT 2012
Rank10Aligned Residues452
% Identity38%Templatec2vgbB_
PDB info PDB header:transferaseChain: B: PDB Molecule:pyruvate kinase isozymes r/l; PDBTitle: human erythrocyte pyruvate kinase
Resolution2.73 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.. .......70....
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Query Sequence  MSRRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSPEDHKMRADKVREIAAKLG. . . . . . RHVAILGDLQGP
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Template Sequence  EPVAARSTSIIATIGPASRSVERLKEMIKAGMNIARLNFSHGSHEYHAESIANVREAVESFAGSPLSYRPVAIALDTKGP
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S


S
SGGG
STTTSS
TTTT
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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   75....80.........90.........100.........110.........120.........130.........140.........150....
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Query Sequence  KIRVSTFKEGKVFLNIGDKFLLDANLGKGEGDKEKVGIDYKGLPADVVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGG
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Template Sequence  EIRTGI. . . . . VELVKGSQVLV. . . . . . . . . TANTVWVDYPNIVRVVPVGGRIYIDDGLISLVVV. . . . . . . . TQVENGG
Template Known Secondary structure 

BB

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BS
TT

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TTTT

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   161..... ...170....... ..180.........190.........200.........210. .......
 
   155....160.........170.........180.........190.........200.........210.........220.........230....
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Query Sequence  PLSNNKGINKLGGGLSAEALTEKDKADIKTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDAKIVAKVERAEAVCSQD
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Template Sequence  VLGSRKGVNLPGAQVDLPGLSEQDVRDLRFGVEHGVDIVFASFVRKASDVAAVRAALGPEGHGIKIISKIENHEGV. . . K
Template Known Secondary structure 

SS
B
SSS


S
SS
TT

TT

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GGGSSS
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   245....250.........260.........270.........280.........290.........300.........310.........320 .
 
   235....240.........250.........260.........270.........280.........290.........300.........310....
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Query Sequence  AMDDIILASDVVMVARGDLGVEIGDPELVGIQKALIRRARQLNRAVITATQMMESMITNPMPTRAEVMDVANAVLDGTDA
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Template Sequence  RFDEILEVSDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNLAGKPVVCATQMLESMITKPRPTRAETSDVANAVLDGADC
Template Known Secondary structure  TSSS
GGGT

S
TTGGGGT
SS

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   322.......330.........340.........350.........360.........370.........380.........390.........400.
 
   315....320.........330.........340.........350..... ....360.........370.........380.........390.
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Query Sequence  VMLSAETAAGQYPSETVAAMARVCLGAEKIPSINVSKHRLD. . . VQFDNVEEAIAMSAMYAANHLKGVTAIITMTESGRT
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Template Sequence  IMLSGETAKGNFPVEAVKMQHAIAREAEAAVYHRQLFEELRRAAPLSRDPTEVTAIGAVEAAFKCCA. AAIIVLTTTGRS
Template Known Secondary structure  STSS
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T
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   402.......410.........420.........430.........440.........450.........460........ .470.........480
 
   392.......400.........410.........420.........430 .........440.........450.........460.....
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Query Sequence  ALMTSRISSGLPIFAMSRHERTLNLTALYRGVTPVHFDS. . . . . . ANDGVAAASEAVNLLRDKGYLMSGDLVIVTQGDVM
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Template Sequence  AQLLSRYRPRAAVIAVTRSAQAARQVHLCRGVFPLLYREPPEAIWADDVDRRVQFGIESGKLRGFLRVGDLVIVVTGWRP
Template Known Secondary structure  T

SSS
GGGSTT

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SSTTS

TT
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   481........490.........500.........510.........520.........530.........540.........550.........560
 
   466...470.........
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Query Sequence  STVGSTNTTRILTV
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Template Sequence  G. SGYTNIMRVLSI
Template Known Secondary structure  S.SS

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   561 ........570...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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