Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	E	M	L	M	Q	W	Y	R	R	R	F	S	D	P	E	A	I	A	L	L	V	I	L	V	A	G	F	G	I	I	F	F	F	S	G	L	L	A	P	L	L	V	A	I	V	L	A	Y	L	L	E	W	P	T	V	R	L	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	I	G	C	S	R	R	W	A	T	S	I	V	L	V	V	F	V	G	I	L	L	L	M	A	F	V	V	L	P	I	A	W	Q	Q	G	I	Y	L	I	R	D	M	P	G	M	L	N	K	L	S	D	F	A	A	T	L	P	R	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Y	P	A	L	M	D	A	G	I	I	D	A	M	A	E	N	M	R	S	R	M	L	T	M	G	D	S	V	V	K	I	S	L	A	S	L	V	G	L	L	T	I	A	V	Y	L	V	L	V	P	L	M	V	F	F	L	L	K	D	K
Secondary structure
SS confidence
Disorder		?			?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	Q	M	L	N	A	V	R	R	V	L	P	R	N	R	G	L	A	G	Q	V	W	K	E	M	N	Q	Q	I	T	N	Y	I	R	G	K	V	L	E	M	I	V	V	G	I	A	T	W	L	G	F	L	L	F	G	L	N	Y	S	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	L	A	V	L	V	G	F	S	V	L	I	P	Y	I	G	A	F	V	V	T	I	P	V	V	G	V	A	L	F	Q	F	G	A	G	T	E	F	W	S	C	F	A	V	Y	L	I	I	Q	A	L	D	G	N	L	L	V	P	V	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Sequence		F	S	E	A	V	N	L	H	P	L	V	I	I	L	S	V	V	I	F	G	G	L	W	G	F	W	G	V	F	F	A	I	P	L	A	T	L	I	K	A	V	I	H	A	W	P	D	G	Q	I	A	Q	E
Secondary structure
SS confidence
Disorder			?	?		?																																													?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3rce chain A Region: 7 - 112 Aligned: 106 Modelled: 106 Confidence: 13.7% Identity: 11% PDB header:transferase/peptide Chain: A: PDB Molecule:oligosaccharide transferase to n-glycosylate proteins; PDBTitle: bacterial oligosaccharyltransferase pglb Phyre2 PDB 2yl4 chain A Region: 6 - 295 Aligned: 282 Modelled: 290 Confidence: 8.0% Identity: 10% PDB header:membrane protein Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10, PDBTitle: structure of the human mitochondrial abc transporter, abcb10 Phyre2 PDB 1ppj chain C domain 2 Region: 196 - 264 Aligned: 69 Modelled: 69 Confidence: 6.3% Identity: 19% Fold: Heme-binding four-helical bundle Superfamily: Transmembrane di-heme cytochromes Family: Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Phyre2 1 c3rceA_ 2 c2yl4A_ 3 d1ppjc2

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3rceA_ 13.7 11 PDB header:transferase/peptide Chain: A: PDB Molecule:oligosaccharide transferase to n-glycosylate proteins; PDBTitle: bacterial oligosaccharyltransferase pglb 2 c2yl4A_ 8.0 10 PDB header:membrane protein Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10, PDBTitle: structure of the human mitochondrial abc transporter, abcb10 3 d1ppjc2 6.3 19 Fold:Heme-binding four-helical bundle Superfamily:Transmembrane di-heme cytochromes Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0