Job Description P0AFI9 Confidence 3.14% Date Thu Jan 5 11:26:28 GMT 2012 Rank 17 Aligned Residues 84 % Identity 7% Template c3hd7A_ PDB info PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 Resolution 3.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	G	I	Y	L	I	R	D	M	P	G	M	L	N	K	L	S	D	F	A	A	T	L	P	R	R	Y	P	A	L	M	D	A	G	I	I	D	A	M	A	E	N	M	R	S	R	M	L	T	M	G	D	S	V	V	K	I	S	L	A	S	L	V	G	L	L	T	I	A	V	Y	L	V	L	V	P	L	M	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	R	L	Q	Q	T	Q	A	Q	V	D	E	V	V	D	I	M	R	V	N	V	D	K	V	L	E	R	D	Q	K	L	S	E	L	D	D	R	A	D	A	L	Q	A	G	A	S	Q	F	E	T	S	A	A	K	L	K	R	K	Y	W	W	K	N	L	K	M	M	I	I	L	G	V	I	C	A	I	I	L	I	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		174	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	F	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	V	Y
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions