 |
Job Description | P0AFI9 | Confidence | 1.69% | Date | Thu Jan 5 11:26:28 GMT 2012 |
Rank | 82 | Aligned Residues | 29 |
% Identity | 7% | Template | c2od5A_ |
PDB info |
PDB header:dna binding protein | Chain: A: PDB Molecule:hypothetical protein; |
PDBTitle: crystal structure of a putative nucleic acid binding protein2 (jcvi_pep_1096688149193) from uncultured marine organism at 1.79 a3 resolution
|
Resolution | 1.79 Å |
|
  |   |
182 | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | M | L | N | A | V | R | R | V | L | P | R | N | R | G | L | A | G | Q | V | W | K | E | M | N | Q | Q | I | T |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|
|
|
|
|
|   |
|
|
|
|
|
|   |
|
|
|
|
|
|
|
|
|
|
|
Template Sequence |   |
R | I | R | E | K | I | K | K | F | L | G | D | R | P | R | N | T | A | E | I | L | E | H | I | N | S | T | X | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | S | S | S |
|  |  |  |  |  |  |  |  |  |  |  | T | S | S | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
14 | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|