Job Description P37757 Confidence 98.21% Date Thu Jan 5 11:57:29 GMT 2012 Rank 22 Aligned Residues 280 % Identity 16% Template c3g7kD_ PDB info PDB header:isomerase Chain: D: PDB Molecule:3-methylitaconate isomerase; PDBTitle: crystal structure of methylitaconate-delta-isomerase Resolution 2.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.																	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																																	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	P	Q	V	Y	H	V	D	A	F	T	S	Q	P	F	R	G	N	S	A	G	V	V	F	P	A	D	N	L	S	.	.	.	E	A	Q	M	Q	L	I	A	R	E	L	G	H	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	F	L	L	H	S	D	D	S	D	V	R	I	R
Query Conservation																																	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.																	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.
Template Sequence		M	R	I	P	C	V	I	M	.	.	.	.	.	.	.	R	A	G	T	S	K	G	I	F	L	K	G	N	D	L	P	A	D	Q	E	L	R	D	K	V	I	L	R	I	F	G	S	P	D	V	R	Q	I	D	G	L	A	G	A	D	P	L	T	S	K	L	A	I	I	G	P	S	T	H	P	D	A	D	V	D
Template Known Secondary structure										.	.	.	.	.	.	.			T	T								G	G	G	S		S	S													T		S		T	T		T	T	S	S	S		S	S	G	G	G											S	T	T		S
Template Predicted Secondary structure										.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.								.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		62	.	.						.	.	.	.	.	70	.				.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.							.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure					.	.	.	.	.								.	.	.																							.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.								.	.	.																							.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	F	T	.	.	.	.	.	P	T	V	E	V	P	I	.	.	.	C	G	H	A	T	V	A	A	H	Y	V	R	A	K	V	L	G	L	G	N	C	T	.	.	.	.	.	.	I	W	Q	T	S	L	A	G	K	H	R	V	T	I	E	K	H	N	D	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation					.	.	.	.	.								.	.	.																							.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.								.	.	.																							.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	T	F	A	Q	V	S	I	T	D	A	V	V	D	Y	N	G	N	C	G	N	I	S	A	G	V	G	P	F	A	I	D	E	S	F	V	K	A	V	E	P	M	T	R	V	C	I	H	N	T	N	T	G	K	L	L	Y	A	E	V	E	V	E	D	G	K	A	K	V	S	G	D	C	K	I	D	G	V	P	G
Template Known Secondary structure									S	S	S	S					S	S			T	T	G	G	G	G								T	T	S	S				S	S									T	T	T												T	T							S	B			T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
					115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure		.	.	.																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	R	I	S	L	E	Q	G	T	P	G	F	E	P	P	L	E	G	E	T	R	A	A	I	I	N	A	L	H	L	T	E	D	D	I	L	P	G	L	P	I	Q	V	A	T	T	G	H	S	K	V	M	I	P	L	K	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																															.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.
Template Sequence		T	N	A	P	E	L	M	D	F	S	D	T	A	G	A	A	T	G	K	V	L	P	T	G	N	V	V	D	V	L	S	T	S	.	.	.	.	K	G	D	I	D	V	S	I	V	D	V	A	N	P	C	I	F	V	H	A	K	D	V	N	M	T	G	T	E	T	P	D	V	I	N	G	N	A	D	L	L	A	Y
Template Known Secondary structure			B								G	G	G	B	T	T	T	T	S	S	S	S	T	T	S		S	S						T	.	.	.	.	T	S									B	S	S							S	G	G	G	T			S									T
Template Predicted Secondary structure																																			.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
										172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.												.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	V	D	I	D	A	L	S	P	D	L	N	A	L	T	A	I	S	K	K	I	G	C	N	G	F	F	P	F	Q	I	R	.	.	.	.	.	.	.	.	.	.	.	P	G	K	N	E	T	D	G	R	M	F	S	P	A	I	G	I	V	E	D	P	V	T	G	N	A	N	G	P	M
Query Conservation		.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	E	I	R	A	K	C	C	V	K	I	G	M	A	A	T	E	K	E	A	S	E	K	S	P	A	F	P	M	I	A	F	V	T	K	P	E	D	Y	V	D	F	S	T	G	N	T	I	S	G	D	D	V	D	L	V	S	R	L	M	F	M	Q	V	L	H	K	T	Y	A	G	T	A	T	A	C	T	G	S
Template Known Secondary structure														T	S		S	S									S	S	S	S														T	T	T						T	T	S		S								T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		233	.	.	.				.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		G	A	W	L	.	.	.	V	H	H	N	V	L	P	H	D	G	N	V	L	R	V	K	G	H	Q	G	R	A	L	G	R	D	G	M	I	E	V	T	V	T	I	R	D	N	Q	P	E	K	V	T	I	S	G	T	A	V	I	L	F	H	A	E	W	A	I	E
Query Conservation						.	.	.
Alig confidence						.	.	.																				.	.	.	.	.
Template Conservation																												.	.	.	.	.
Template Sequence		A	A	R	I	P	G	T	I	V	N	Q	V	L	R	D	T	G	D	E	D	T	V	R	I	G	H	.	.	.	.	.	P	A	G	V	I	P	V	V	S	I	V	K	D	G	K	V	E	K	A	A	L	I	R	T	A	R	R	I	M	E	G	Y	V	Y	V	E
Template Known Secondary structure				T	S	T	T	S						S				T	T									.	.	.	.	.	T	T											T	T
Template Predicted Secondary structure																												.	.	.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.						340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions