Job Description P37757 Confidence 98.05% Date Thu Jan 5 11:57:29 GMT 2012 Rank 23 Aligned Residues 281 % Identity 18% Template c2pw0A_ PDB info PDB header:unknown function Chain: A: PDB Molecule:prpf methylaconitate isomerase; PDBTitle: crystal structure of trans-aconitate bound to methylaconitate2 isomerase prpf from shewanella oneidensis Resolution 1.57 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.								.	.	.	.	.	.	.	40	.	.	.	.	.	.																			.	.	.	50	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	P	Q	V	Y	H	V	D	A	F	T	S	Q	P	F	R	G	N	S	A	G	V	V	F	P	A	D	N	L	S	E	.	.	.	.	.	.	.	A	Q	M	Q	L	I	A	R	E	L	G	H	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	F	L	L	H	S	D	D
Query Conservation																																		.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.																		.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.
Template Sequence		I	K	V	A	A	T	Y	M	.	.	.	.	.	.	.	R	G	G	T	S	K	G	V	F	F	R	L	Q	D	L	P	E	A	A	Q	V	P	G	P	A	R	D	A	L	L	L	R	V	I	G	S	P	D	P	Y	A	K	Q	I	D	G	M	G	G	A	T	S	S	T	S	K	T	V	I	L	S	H	S	S	K
Template Known Secondary structure										.	.	.	.	.	.	.			T	T								G	G	G	S		G	G	G	S	S	S	S												T		S		T	T	S	S		T	T	S	S			S	S	T	T	T	S										S
Template Predicted Secondary structure										.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.								.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		56	.	.	.	60	.	.	.						.	.	.	.	.	.	70	.				.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90											.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.									.	.	.																				.	.	.	.	.	.	.	.	.	.																											.
Query SS confidence										.	.	.	.	.									.	.	.																				.	.	.	.	.	.	.	.	.	.																											.
Query Sequence		S	D	V	R	I	R	Y	F	.	.	.	.	.	T	P	T	V	E	V	P	I	.	.	.	C	G	H	A	T	V	A	A	H	Y	V	R	A	K	V	L	G	L	G	.	.	.	.	.	.	.	.	.	.	N	C	T	I	W	Q	T	S	L	A	G	K	H	R	V	T	I	E	K	H	N	D	D	Y	R	I	.
Query Conservation										.	.	.	.	.									.	.	.																				.	.	.	.	.	.	.	.	.	.																											.
Alig confidence										.	.	.	.	.									.	.	.																				.	.	.	.	.	.	.	.	.	.																											.
Template Conservation
Template Sequence		A	N	H	D	V	D	Y	L	F	G	Q	V	S	I	D	K	P	F	V	D	W	S	G	N	C	G	N	L	T	A	A	V	G	A	F	A	I	S	N	G	L	I	D	A	A	R	I	P	R	N	G	V	C	T	V	R	I	W	Q	A	N	I	G	K	T	I	I	A	H	V	P	I	T	D	G	A	V	Q	E	T
Template Known Secondary structure		T	T		S										S	S	S	S					S	S			T	T	T											T	T		S		G	G	G			S	S										T	T	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
				117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure		.	.																										.	.									.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																										.	.									.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	S	L	E	Q	G	T	P	G	F	E	P	P	L	E	G	E	T	R	A	A	I	I	N	A	L	.	.	H	L	T	E	D	D	I	L	.	.	.	.	P	G	L	P	I	Q	V	A	T	T	G	H	S	K	V	M	I	P	L	K	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.																										.	.									.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																										.	.									.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	D	F	E	L	D	G	V	T	F	P	A	A	E	V	Q	I	E	F	M	N	P	A	A	D	M	F	P	T	G	N	L	V	D	V	L	E	V	P	G	I	G	R	F	N	A	T	M	I	N	A	G	I	P	T	I	F	I	N	A	E	D	L	G	Y	T	G	T	E	L	Q	D	D	I	N	S	D	N	A	A
Template Known Secondary structure			S	B			T	T		S	S		B									S		B		.			T	T	S		S	S						T	T	T										B	S	S							G	G	G	G	T			S								T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
													172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.												.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	V	D	I	D	A	L	S	P	D	L	N	A	L	T	A	I	S	K	K	I	G	C	N	G	F	F	P	F	Q	I	R	P	G	K	N	.	.	.	.	.	.	.	.	.	.	.	E	T	D	G	R	M	F	S	P	A	I	G	I	V	E	D	P	V	T	G	N	A	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.
Template Sequence		L	A	K	F	E	T	I	R	A	H	G	A	L	R	M	G	L	I	K	H	I	D	E	A	A	S	.	.	R	Q	H	T	P	K	I	A	F	V	A	P	P	K	S	Y	A	S	S	S	G	K	T	V	A	A	E	D	V	D	L	L	V	R	A	L	S	M	G	K	L	H	H	A	M	M	G	T	A	A	V	A
Template Known Secondary structure																T	T	S		S	S	G	G	G	G	G	G	.	.			S	S	S							S							T	T	S					G	G	G		S								T	T				S	S
Template Predicted Secondary structure																												.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.			.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.					.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure												.	.																																						.	.	.	.
Query SS confidence												.	.																																						.	.	.	.
Query Sequence		G	P	M	G	A	W	L	V	H	H	.	.	N	V	L	P	H	D	G	N	V	L	R	V	K	G	H	Q	G	R	A	L	G	R	D	G	M	I	E	V	T	V	T	I	R	D	N	Q	P	.	.	.	.	E	K	V	T	I	S	G	T	A	V	I	L	F	H	A	E	W	A	I
Query Conservation												.	.																																						.	.	.	.
Alig confidence												.	.																	.	.	.	.	.																	.	.	.	.
Template Conservation																														.	.	.	.	.
Template Sequence		I	G	T	A	A	A	I	P	G	T	L	V	N	L	A	A	G	G	G	E	K	E	A	V	R	F	G	H	.	.	.	.	.	P	S	G	T	L	R	V	G	A	Q	A	V	Q	E	N	G	E	W	T	V	I	K	A	I	M	S	R	S	A	R	V	L	M	E	G	F	V	R	V
Template Known Secondary structure							T	S	T	T	S						T	T	S	S			S							.	.	.	.	.	T	T													T	T
Template Predicted Secondary structure																														.	.	.	.	.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.						.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions