 |
Job Description | P16433 | Confidence | 12.65% | Date | Thu Jan 5 11:35:09 GMT 2012 |
Rank | 74 | Aligned Residues | 95 |
% Identity | 13% | Template | c1vmeB_ |
PDB info |
PDB header:electron transport | Chain: B: PDB Molecule:flavoprotein; |
PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution
|
Resolution | 1.80 Å |
|
 |
  |   |
64 | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . |
Predicted Secondary structure |   |
|  |  |  |
|
|
|  |  |
|
|
|  |  |  |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | A | E | R | F | G | I | K | V | V | P | S | P | R | H | A | D | I | L | L | F | T | G | A | V | T | R | A | M | R | S | P | A | L | R | A | W | Q | S | A | P | D | P | K | I | C | I | S | Y | G | A | C | G | N | S | G | G | I | F | H | D | L | Y | C | V | W | G | G | T | D | K | I | V | P | V | D | V | Y | I | P |
Query Conservation |   |
|   |
|
|
|
|
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |
|
|   |   |   |
|   |
|   |
|
|
|
|
|
|
|
|   |
|
|
|   |
|
|
|
|   |
|
|
|
|
|   |
|
|
|
|
|   |   |
|
|
|   |
|
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |
|
|   |
|
|
|
| . | . | . | . | . | . |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|
|
|
|
|   |   |
|   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |
Template Sequence |   |
D | I | P | D | S | E | A | L | I | F | G | V | S | T | . |
. |
. |
. |
. |
. |
Y | E | A | E | I | H | P | L | X | R | F | T | L | L | E | I | I | D | K | A | N | Y | E | K | P | V | L | V | F | G | V | H | G | W | A | P | S | A | E | R | T | A | G | E | L | L | K | E | T | K | F | R | I | L | S | F | T | E | I | K |
Template Known Secondary structure |   |
 | S | T | T |
| S |  |  |  |  |  |  |
|  | . | . | . | . | . | . |  | T | T |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
| T | T | S |
|
|  |  |  |  |  |  | T | S | S |
|  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |
|
|  |  |  |  |  |  |
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
304 | . | . | . | . | . | 310 | . | . | . | . | . | . | . | |
|
|
|
|
|
. | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . |
  |
  |   |
144 | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | C | P | P | T | P | A | A | T | L | Y | G | F | A | M | A | L | G | L | L | E |
Query Conservation |   |
|
|
|
|
|
|
|
|
|
|   |
|
|   |   |
|
|
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |
|   |
Template Sequence |   |
G | S | N | X | D | E | R | K | I | E | E | A | I | S | L | L | K | K | E | L | E |
Template Known Secondary structure |   |
S | S | S |
|
| T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
378 | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|