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Job DescriptionP11667
Confidence2.05%DateThu Jan 5 11:32:50 GMT 2012
Rank38Aligned Residues11
% Identity18%Templatec1zc1A_
PDB info PDB header:protein turnoverChain: A: PDB Molecule:ubiquitin fusion degradation protein 1; PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   117..120.......
Predicted Secondary structure 
Query SS confidence 










Query Sequence  AVTWLNPHVYL
Query Conservation     
 


 

Alig confidence 










Template Conservation 
 

 
 



Template Sequence  FLDISDPKAVL
Template Known Secondary structure  TSS
Template Predicted Secondary structure 





Template SS confidence 










   134.....140....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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