Job Description P39180 Confidence 100.00% Date Thu Jan 5 11:58:24 GMT 2012 Rank 3 Aligned Residues 268 % Identity 13% Template d1uynx_ SCOP info Transmembrane beta-barrels Autotransporter Autotransporter Resolution 2.60

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		715	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	M	L	T	Q	A	M	D	Y	D	R	I	V	A	G	S	R	S	H	Q	T	G	V	N	G	E	N	N	S	V	R	L	S	I	Q	G	G	H	L	G	H	D	N	N	G	G	I	A	R	G	A	T	P	E	S	S	G	S	Y	G	F	V	R	L	E	G	D	L	M	R	T	E	V	A	G	M	S	V	T	A
Query Conservation
Alig confidence																																														.	.	.																										.	.	.	.
Template Conservation																																														.	.	.																										.	.	.	.
Template Sequence		T	V	Y	A	D	S	T	A	A	H	A	D	M	Q	G	R	R	L	K	A	V	S	D	G	L	D	H	N	G	T	G	L	R	V	I	A	Q	T	Q	Q	D	G	G	T	.	.	.	W	E	Q	G	G	V	E	G	K	M	R	G	S	T	Q	T	V	G	I	A	A	K	T	G	E	.	.	.	.	N	T	T	A
Template Known Secondary structure																									T	T	T	S			S	S														.	.	.				S	S																				T	.	.	.	.	T
Template Predicted Secondary structure																																														.	.	.																										.	.	.	.
Template SS confidence
		788	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.				.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.					.	.	.	860
		795	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.						.	.	.	.	.	860	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.
Query Sequence		G	V	Y	G	A	A	G	H	S	S	V	D	V	K	D	D	D	G	S	R	A	G	T	V	R	D	D	A	G	S	L	G	G	Y	L	N	L	V	H	T	S	S	G	L	W	A	D	I	V	A	Q	G	T	R	H	S	M	K	A	S	.	.	.	.	.	S	D	N	N	D	F	R	A	R	G	W	G	W	L	G
Query Conservation																																																														.	.	.	.	.
Alig confidence															.	.	.	.	.	.																			.																							.	.	.	.	.
Template Conservation															.	.	.	.	.	.																			.
Template Sequence		A	A	T	L	G	M	G	R	S	T	W	S	E	.	.	.	.	.	.	N	S	A	N	A	K	T	D	S	I	S	L	F	A	G	I	R	H	.	D	A	G	D	I	G	Y	L	K	G	L	F	S	Y	G	R	Y	K	N	S	I	S	R	S	T	G	A	D	E	H	A	E	G	S	V	N	G	T	L	M	Q	L
Template Known Secondary structure															.	.	.	.	.	.	T	T																	.			T	T	T																					S	S	S
Template Predicted Secondary structure															.	.	.	.	.	.																			.
Template SS confidence
		861	.	.	.	.	.	.	.	.	870	.	.	.							.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.		.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.
		870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.					.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.
Query SS confidence																																								.	.	.	.
Query Sequence		S	L	E	T	G	L	P	F	S	I	T	D	N	L	M	L	E	P	Q	L	Q	Y	T	W	Q	G	L	S	L	D	D	G	K	D	N	A	G	Y	.	.	.	.	V	K	F	G	H	G	S	A	Q	H	V	R	A	G	F	R	L	G	S	H	N	D	M	T	F	G	E	G	T	S	S	R	A	P	L	R	D	S
Query Conservation																																								.	.	.	.
Alig confidence										.	.	.																												.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	L	G	G	V	N	V	.	.	.	P	T	G	D	L	T	V	E	G	G	L	R	Y	D	L	L	K	Q	D	A	F	A	E	K	G	S	A	L	G	W	S	G	N	S	L	T	E	G	T	L	V	G	L	A	G	L	K	L	S	Q	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										.	.	.																									S		T	T																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		934	.	.	.	.	.	940	.				.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.
		946	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	H	S	V	S	E	L	P	V	N	W	W	V	Q	P	S	V	I	R	T	F	S	S	R	G	D	M	R	V	G	T	S	T	A	G	S	G	M	T	F	S	P	S	Q	N	G	T	S	L	D	L	Q	A	G	L	E	A	R	V	R	E	N	I	T	L	G	V	Q	A	G	Y	A	H	S	V	S	G	S	S
Query Conservation
Alig confidence		.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.
Template Conservation		.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.
Template Sequence		.	.	.	.	.	L	S	D	K	A	V	L	F	A	T	A	G	V	E	R	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	R	D	Y	T	V	T	G	P	H	T	R	L	V	A	G	L	G	A	D	V	E	F	G	N	G	W	N	G	L	A	R	Y	S	Y	A	G	.	.	.	S	K	Q
Template Known Secondary structure		.	.	.	.	.		S	S	S													S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																									T	T												.	.	.		T	T
Template Predicted Secondary structure		.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.
Template SS confidence
							996	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.															.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050				.	.	.
		1026	.	.	.	1030	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	G	Y	N	G	Q	A	T	L	N	V	T	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	G	N	H	S	G	R	V	G	V	G	Y	R	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1071	.	.	.	.	.	.	.	.	1080	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions