Job Description P39180 Confidence 97.66% Date Thu Jan 5 11:58:24 GMT 2012 Rank 20 Aligned Residues 130 % Identity 14% Template d1qj8a_ SCOP info Transmembrane beta-barrels OMPA-like Outer membrane protein Resolution 1.90

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		865	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.		.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		W	G	W	L	G	S	L	E	T	G	L	P	F	S	I	T	D	N	.	L	M	L	E	P	Q	L	Q	Y	T	W	Q	G	L	S	L	D	D	G	K	D	N	A	G	Y	V	K	F	G	H	G	S	A	Q	H	V	R	A	G	F	R	L	G	S	H	N	D	M	T	F	G	E	G	T	S	S	R	A	P	L	R
Query Conservation																				.
Alig confidence																				.					.	.	.	.												.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.												.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	N	K	M	G	G	F	N	L	K	Y	R	Y	E	E	D	N	S	P	L	G	V	I	.	.	.	.	G	S	F	T	Y	T	E	K	S	R	T	.	A	S	S	G	D	Y	N	K	N	Q	Y	Y	G	I	T	A	G	P	A	Y	R	I	N	D	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	T	T		S					.	.	.	.												.		T	T	S																				T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.												.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40					.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		944	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	A	K	H	S	V	S	E	L	P	V	N	W	W	V	Q	P	S	V	I	R	T	F	S	S	R	G	D	M	R	V	G	T	S	T	A	G	S	G	M	T	F	S	P	S	Q	N	G	T	S	L	D	L	Q	A	G	L	E	A	R	V	R	E	N	I	T	L	G	V	Q	A	G	Y	A	H	S	V	S	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.						.	.	.																																							.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.						.	.	.																																							.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	A	S	I	Y	G	V	V	G	V	G	Y	G	.	.	.	.	.	.	.	K	F	Q	T	T	.	.	.	E	Y	P	T	Y	K	N	D	T	S	D	Y	G	F	S	Y	G	A	G	L	Q	F	N	P	M	E	N	V	A	L	D	F	S	Y	E	Q	S	R	.	.	.	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.						.	.	.		T	T	T																				S	S	T	T												.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.						.	.	.																																							.	.	.
Template SS confidence
													77	.	.	80	.	.	.	.	.	.	.	.								.	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.				.
		1024	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	A	E	G	Y	N	G	Q	A	T	L	N	V	T	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	S	V	D	V	G	T	W	I	A	G	V	G	Y	R	F
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions