Job Description P39180 Confidence 99.49% Date Thu Jan 5 11:58:24 GMT 2012 Rank 7 Aligned Residues 526 % Identity 13% Template d1daba_ SCOP info Single-stranded right-handed beta-helix Pectin lyase-like Virulence factor P.69 pertactin Resolution 2.50

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		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		K	G	W	Q	V	V	K	P	G	T	V	A	T	D	T	V	V	N	T	G	A	E	G	G	P	D	A	E	N	G	D	T	G	Q	F	V	R	G	D	A	V	R	T	T	I	N	K	N	G	R	Q	I	V	R	A	E	G	T	A	N	T	T	V	V	Y	A	G	G	D	Q	T	V	H	G	H	A	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																																																																														.	.	.	.
Template Conservation
Template Sequence		N	N	Q	S	I	V	K	T	G	E	R	Q	H	G	I	H	I	Q	G	S	D	P	G	G	V	R	T	A	S	G	T	T	I	K	V	S	G	R	Q	A	Q	G	I	L	L	E	N	P	A	A	E	L	Q	F	R	N	G	S	V	T	S	S	G	Q	L	S	D	D	G	I	R	R	F	L	G	T	V	T	V	K
Template Known Secondary structure			S							S	T	T			S					T	T	S									S							S	T	T			S														S							S			B		S	S	S	S		B			S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
									248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	L	D	T	T	L	N	G	G	Y	Q	Y	V	H	N	G	G	T	A	S	D	T	V	V	N	S	D	G	W	Q	I	V	K	N	G	G	V	A	G	N	T	T	V	N	Q	K	G	R	L	Q	V	D	A	G	G	T	A	T	N	V	T	L	K	Q	G	G	A	L	V	T	S	T	A	A
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	K	L	V	A	D	H	A	T	L	A	N	V	G	D	T	W	D	D	D	G	I	A	L	Y	V	A	G	E	Q	A	Q	A	S	I	A	D	S	T	L	Q	G	A	G	G	V	Q	I	E	R	G	A	N	V	T	V	Q	R	S	A	I	V	D	G	G	L	H	I	G	A	L	Q	S	L	Q	P	E	D	L
Template Known Secondary structure									S							S		T	T	T	S									S	T	T							S					S	T	T						T	T							S					S	B							S	S			S				S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	T	G	I	N	R	L	G	A	F	S	V	V	E	G	K	A	D	N	V	V	L	E	N	G	G	R	L	D	V	L	T	G	H	T	A	T	N	T	R	V	D	D	G	G	T	L	D	V	R	N	G	G	T	A	T	T	V	S	M	G	N	G	G	V	L	L	A	D	S	G	A	A	V	S	G	T	R	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	P	S	R	V	V	L	R	D	T	N	V	T	A	V	P	A	S	G	A	P	A	A	V	S	V	L	G	A	S	E	L	T	L	D	G	G	H	I	T	G	G	R	A	A	G	V	A	A	M	Q	G	A	V	V	H	L	Q	R	A	T	I	R	R	G	D	A	L	A	G	G	A	V	P	G	G	A	V	P	G
Template Known Secondary structure										S							T	T	S			S							S	S														S	S							S	S												S						S	S	S	S	S		S	S			S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	K	A	F	S	I	G	G	G	Q	A	D	A	L	M	L	E	K	G	S	S	F	T	L	N	A	G	D	T	A	T	D	T	T	V	N	G	G	L	F	T	A	R	G	G	T	L	A	G	T	T	T	L	N	N	G	A	I	L	T	L	S	G	K	T	V	N	N	D	T	L	T	I	R	E	G	D	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	V	P	G	G	F	G	P	G	G	F	G	P	V	L	D	G	W	Y	G	V	D	V	S	G	S	S	V	E	L	A	Q	S	I	V	E	A	P	E	L	G	A	A	I	R	V	G	R	G	A	R	V	T	V	P	G	G	S	L	S	A	P	H	G	N	V	I	E	T	G	G	A	R	R	F	A	P	Q	A
Template Known Secondary structure						S	S	S			S	S				S	S		S								S	S						S							S	S								T	T							S	S																S	S			S	S	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	G	G	S	L	T	G	N	G	S	V	E	K	S	G	S	G	T	L	T	V	S	N	T	T	L	T	Q	K	A	V	N	L	N	E	G	T	L	T	L	N	D	S	T	V	T	T	D	V	I	A	Q	R	G	T	A	L	K	L	T	G	S	T	V	L	N	G	A	I	D	P	T	N	V	T	L	A	S	G
Query Conservation
Alig confidence															.	.	.
Template Conservation															.	.	.
Template Sequence		A	P	L	S	I	T	L	Q	A	G	A	H	A	.	.	.	Q	G	K	A	L	L	Y	R	V	L	P	E	P	V	K	L	T	L	T	G	G	A	D	A	Q	G	D	I	V	A	T	E	L	P	S	I	P	G	T	S	I	G	P	L	D	V	A	L	A	S	Q	A	R	W	T	G	A	T	R	A	V	D	S	L
Template Known Secondary structure										T	T				.	.	.										S	S									T	T											S		S	S	S		G	G	G	S									T	T							B	S
Template Predicted Secondary structure															.	.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.				.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	W	N	I	P	D	N	A	T	V	Q	S	V	V	D	D	L	S	H	A	G	Q	I	H	F	T	S	T	R	T	G	K	F	V	P	A	T	L	K	V	K	N	L	N	G	Q	N	G	T	I	S	L	R	V	R	P	D	M	A	Q	N	N	A	D	R	L	V	I	D	G	G	R	A	T	G	K	T	I	L
Query Conservation
Alig confidence																																																									.	.													.
Template Conservation																																																									.	.													.
Template Sequence		S	I	D	N	A	T	W	V	M	T	D	N	S	N	V	G	A	L	R	L	A	S	D	G	S	V	D	F	Q	Q	P	A	E	A	G	R	F	K	V	L	T	V	N	T	L	A	G	S	G	L	F	R	M	N	V	.	.	F	A	D	L	G	L	S	D	K	L	V	V	.	M	Q	D	A	S	G	Q	H	R	L
Template Known Secondary structure					S							S											T	T									S	S	T	T																					.	.		G	G	G	T								.						S
Template Predicted Secondary structure																																																									.	.													.
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.			.	.	.	.	.	460	.	.	.	.	.	.		.	.	.	470	.	.	.	.	.	.
		641	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	V	N	A	G	N	S	A	S	G	L	A	T	S	G	K	G	I	Q	V	V	E	A	I	N	G	A	T	T	E	E	G	A	F	V	Q	G	N	R	L	Q	A	G	A	F	N	Y	S	L	N	R	D	S	D	E	S	W	Y	L	R	S	E	N	A	Y	R
Query Conservation
Alig confidence											.	.	.	.
Template Conservation											.	.	.	.
Template Sequence		W	V	R	N	S	G	S	E	P	.	.	.	.	A	S	A	N	T	L	L	L	V	Q	T	P	L	G	S	A	A	T	F	T	L	A	N	K	D	G	K	V	D	I	G	T	Y	R	Y	R	L	A	A	N	G	N	G	Q	W	S	L	V	G	A	K	A	P	P
Template Known Secondary structure							S				.	.	.	.	S	S											S	S									S	G	G	G					T	T									S	S	S
Template Predicted Secondary structure											.	.	.	.
Template SS confidence
		477	.	.	480	.	.	.	.	.					.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.