Job Description P39180 Confidence 97.64% Date Thu Jan 5 11:58:24 GMT 2012 Rank 21 Aligned Residues 676 % Identity 9% Template c3syjA_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:adhesion and penetration protein autotransporter; PDBTitle: crystal structure of the haemophilus influenzae hap adhesin Resolution 2.20 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.																		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	V	W	N	H	M	T	G	A	F	V	V	A	S	E	L	A	R	A	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	G	G	V	A	V	A	L	S	L	A	A	V	T	S	L	P	V	L	A	A	D	I	V	V	H	P	G	E	T	V	N	G	G	T	L	A	N	H	D	N
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	I	Y	D	A	E	K	Q	K	W	L	I	N	G	I	L	R	E	N	G	F	Q	L	V	R	K	S	Y	F	D	E	I	F	E	R	D	L	H	T	S	L	Y	T	R	A	G	N	G	V	Y	T	I	S	G	N	D	N	G	Q	G	S	I	T	Q	K	S	G	I	P	S	E	I	K	I	T	L	A	N	M	S
Template Known Secondary structure						T	T	T	T																																				T	T	S										T									S	S	S	S	S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	V	F	G	T	T	N	G	M	T	I	S	T	G	L	E	Y	G	P	D	N	E	A	N	T	G	G	Q	W	V	Q	D	G	G	T	A	N	K	T	T	V	T	S	G	G	L	Q	R	V	N	P	G	G	S	V	S	D	T	V	I	S	A	G	G	G	Q	S	L	Q	G	R	A	V	N	T	T	L	N	G
Query Conservation
Alig confidence																																																																				.
Template Conservation																																																																				.
Template Sequence		L	P	L	K	E	K	D	K	V	H	N	P	R	Y	D	G	P	N	I	Y	S	P	R	L	N	N	G	E	T	L	Y	F	M	D	Q	K	Q	G	S	L	I	F	A	S	D	I	N	Q	G	A	G	G	L	Y	F	E	G	N	F	T	V	S	P	N	S	N	.	Q	T	W	Q	G	A	G	I	H	V	S	E	N
Template Known Secondary structure		S		S	S							S	G	G	G		S										T									S	S							S	S					T	T							S							S	S	S	.		B			S	S						T	T
Template Predicted Secondary structure																																																																				.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.		.	.	.	.	.	.	.	.	410	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	Q	W	M	H	E	G	A	I	A	T	G	T	V	I	N	D	K	G	W	Q	V	V	K	P	G	T	V	A	T	D	T	V	V	N	T	G	A	E	G	G	P	D	A	E	N	G	D	T	G	Q	F	V	R	G	D	A	V	R	T	T	I	N	K	N	G	R	Q	I	V	R	A	E	G	T	A	N	T	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	T	V	T	W	K	V	N	G	V	E	H	D	R	L	S	K	I	G	K	G	T	L	H	V	Q	A	K	G	E	N	K	G	S	I	S	V	G	D	G	K	V	I	L	E	Q	Q	A	D	D	Q	G	N	K	Q	A	F	S	E	I	G	L	V	S	G	R	G	T	V	Q	L	N	D	D	K	Q	F	D	T	D
Template Known Secondary structure									B			T	T							S	S	S							B	S	B																	B			T	T				B	S		S														S	S	S	S		S		G	G
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	Y	A	G	G	D	Q	T	V	H	G	H	A	L	D	T	T	L	N	G	G	Y	Q	Y	V	H	N	G	G	T	A	S	D	T	V	V	N	S	D	G	W	Q	I	V	K	N	G	G	V	A	G	N	T	T	V	N	Q	K	G	R	L	Q	V	D	A	G	G	T	A	T	N	V	T	L	K	Q	G	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	F	Y	F	G	F	R	G	G	R	L	D	L	N	G	H	S	L	T	F	K	R	I	Q	N	T	D	E	G	A	M	I	V	N	H	N	T	T	Q	A	A	N	V	T	I	T	G	N	E	S	I	V	L	P	N	G	N	N	I	N	K	L	D	Y	R	K	E	I	A	Y	N	G	W	F	G	E	T	D	K	N
Template Known Secondary structure		G					T	T							T	T						S	S					S	T	T								S	S	S										S			S				S	S				G	G	G	G		S						S			S				T	T
Template Predicted Secondary structure
Template SS confidence
		495	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	T	S	T	A	A	T	V	T	G	I	N	R	L	G	A	F	S	V	V	E	G	K	A	D	N	V	V	L	E	N	G	G	R	L	D	V	L	T	G	H	T	A	T	N	T	R	V	D	D	G	G	T	L	D	V	R	N	G	G	T	A	T	T	V	S	M	G	N	G	G	V	L	L	A	D	S	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	H	N	G	R	L	N	L	I	Y	K	P	T	T	E	D	R	T	L	L	L	S	G	G	T	N	L	K	G	D	I	T	Q	T	K	G	K	L	F	F	S	G	R	P	T	P	H	A	Y	N	H	L	N	K	R	W	S	E	M	E	G	I	P	Q	G	E	I	V	W	D	H	D	W	I	N	R	T	F	K	A
Template Known Secondary structure		S												S	S	S	S							S					S	S						S	S														B											T			S	B					T	T
Template Predicted Secondary structure
Template SS confidence
		575	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	S	G	T	R	S	D	G	K	A	F	S	I	G	G	G	Q	A	D	A	L	M	L	E	K	G	S	S	F	T	L	N	A	G	D	T	A	T	D	T	T	V	N	G	G	L	F	T	A	R	G	G	T	L	A	G	T	T	T	L	N	N	G	A	I	L	T	L	S	G	K	T	V	N	N	D	T	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	F	Q	I	K	G	G	S	A	V	V	S	R	N	V	S	S	I	E	G	N	W	T	V	S	N	N	A	N	A	T	F	G	V	V	P	N	Q	Q	N	T	I	C	T	R	S	D	W	T	G	L	T	T	C	Q	K	V	D	L	T	D	T	K	V	I	N	S	I	P	K	T	Q	I	N	G	S	I	N	L
Template Known Secondary structure								S	S						S	S												T	T									T	T	S									T	T	T																			S							S
Template Predicted Secondary structure
Template SS confidence
		655	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	E	G	D	A	L	L	Q	G	G	S	L	T	G	N	G	S	V	E	K	S	G	S	G	T	L	T	V	S	N	T	T	L	T	Q	K	A	V	N	L	N	E	G	T	L	T	L	N	D	S	T	V	T	T	D	V	I	A	Q	R	G	T	A	L	K	L	T	G	S	T	V	L	N	G	A	I	D	P	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	D	N	A	T	A	N	V	K	G	L	A	K	L	N	G	N	V	T	L	T	N	H	S	Q	F	T	L	S	N	N	A	T	Q	I	G	N	I	R	L	S	D	N	S	T	A	T	V	D	N	A	N	L	N	G	N	V	H	L	T	D	S	A	Q	F	S	L	K	N	S	H	F	S	H	Q	I	Q	G	D	K
Template Known Secondary structure			T	T							S	S					S						T	T							T	T					S						T	T							S	S				S						T	T							S					S						T
Template Predicted Secondary structure
Template SS confidence
		735	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.
		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	T	L	A	S	G	A	T	W	N	I	P	D	N	A	T	V	Q	S	V	V	D	D	L	S	H	A	G	Q	I	H	F	T	S	T	R	T	G	K	F	V	P	A	T	L	K	V	K	N	L	N	G	Q	N	G	T	I	S	L	R	V	R	P	D	M	A	Q	N	N	A	D	R	L	V	I	D	G	G	R
Query Conservation
Alig confidence								.	.	.																					.																										.	.	.																				.
Template Conservation								.	.	.																					.																										.	.	.																				.
Template Sequence		G	T	T	V	T	L	.	.	.	E	N	A	T	W	T	M	P	S	D	T	T	L	Q	N	L	T	L	N	N	.	S	T	I	T	L	N	S	A	Y	S	R	F	N	T	L	T	V	N	G	K	L	S	G	Q	G	.	.	.	T	F	Q	F	T	S	S	L	F	G	Y	K	S	D	K	L	K	L	S	.	N	D
Template Known Secondary structure		T						.	.	.		S							S					S							.					S		G	G	G										S							.	.	.								T	T	T	T									.	T	T
Template Predicted Secondary structure								.	.	.																					.																										.	.	.																				.
Template SS confidence
		815	.	.	.	.	820				.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840		.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.				.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.		.	.
		634	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.			.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		A	T	G	K	T	I	L	N	L	V	N	A	G	N	S	A	S	G	L	A	T	S	G	K	G	I	Q	V	V	E	A	I	N	G	A	T	T	E	E	G	A	F	.	.	V	Q	G	N	R	L	Q	A	G	A	F	N	Y	S	L	N	R	D	S	D	E	S	W	Y	L
Query Conservation																																												.	.
Alig confidence																		.	.	.	.																							.	.																		.
Template Conservation																		.	.	.	.																																										.
Template Sequence		A	E	G	D	Y	I	L	S	V	R	N	T	G	K	E	P	.	.	.	.	E	T	L	E	Q	L	T	L	V	E	S	K	D	N	Q	P	L	S	D	K	L	K	F	T	L	E	N	D	H	V	D	A	G	A	L	R	Y	K	L	V	K	.	N	D	G	E	F	R	L
Template Known Secondary structure														S				.	.	.	.	S	S										S	S	S	S				T	T						T	T	S					T	T								.		T	T
Template Predicted Secondary structure																		.	.	.	.																																										.
Template SS confidence
		910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.					.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.		.	.	.	970	.	.	.