Job Description P39180 Confidence 100.00% Date Thu Jan 5 11:58:24 GMT 2012 Rank 4 Aligned Residues 243 % Identity 19% Template c3qq2C_ PDB info PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Resolution 3.00 Å

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		740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	N	S	V	R	L	S	I	Q	G	G	H	L	G	H	D	N	N	G	G	I	A	R	G	A	T	P	E	S	S	G	S	Y	G	F	V	R	L	E	G	D	L	M	R	T	E	V	A	G	M	S	V	T	A	G	V	Y	G	A	A	G	H	S	S	V	D	V	K	D	D	D	G	S	R	A	G	T	V	R
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.																.																										.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.																.																										.	.	.	.	.
Template Sequence		D	A	G	G	P	W	A	R	T	F	S	E	R	Q	Q	I	S	.	.	.	.	.	.	.	.	.	.	N	A	Y	D	Q	T	V	S	G	L	E	I	G	L	D	.	R	G	W	S	A	S	G	G	R	W	Y	A	G	G	L	L	G	Y	T	Y	A	D	R	T	Y	.	.	.	.	.	P	G	D	G	G	G	K
Template Known Secondary structure																			.	.	.	.	.	.	.	.	.	.																.						T	T																		B	.	.	.	.	.	T	T	T	B
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.																.																										.	.	.	.	.
Template SS confidence
		745	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.											.	.	.	.	.	.	.	.	770	.	.	.	.	.	.		.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.						.	.	.	.	.	.	.
		820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.						.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.
Query SS confidence																																					.	.	.	.	.
Query Sequence		D	D	A	G	S	L	G	G	Y	L	N	L	V	H	T	S	S	G	L	W	A	D	I	V	A	Q	G	T	R	H	S	M	K	A	S	.	.	.	.	.	S	D	N	N	D	F	R	A	R	G	W	G	W	L	G	S	L	E	T	G	L	P	F	S	I	T	D	N	L	M	L	E	P	Q	L	Q	Y	T	W	Q
Query Conservation																																					.	.	.	.	.
Alig confidence														.																							.	.	.	.	.
Template Conservation														.
Template Sequence		V	K	G	L	H	V	G	G	Y	A	A	Y	.	V	G	D	G	G	Y	Y	L	D	T	V	L	R	L	G	R	Y	D	Q	Q	Y	N	I	A	G	T	D	G	G	R	V	T	A	D	Y	R	T	S	G	A	A	W	S	L	E	G	G	R	R	F	E	L	P	N	D	W	F	A	E	P	Q	A	E	V	M	L	W
Template Known Secondary structure														.			S	S	S	B																				S	S	S																				B					G	G	G
Template Predicted Secondary structure														.
Template SS confidence
		813	.	.	.	.	.	.	820	.	.	.	.		.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.
		895	.	.	.	.	900	.	.	.	.	.	.		.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		G	L	S	L	D	D	G	K	D	N	A	G	.	Y	V	K	F	G	H	G	S	A	Q	H	V	R	A	G	F	R	L	G	S	H	N	D	M	T	F	G	E	G	T	S	S	R	A	P	L	R	D	S	A	K	H	S	V	S	E	L	P	V	N	W	W	V	Q	P	S	V	I	R	T	F	S	S	R	G	D	M
Query Conservation														.
Alig confidence														.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Sequence		R	T	S	G	K	R	Y	R	A	S	N	G	L	R	V	K	V	D	A	N	T	A	T	L	G	R	L	G	L	R	F	G	R	R	I	A	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	N	I	V	Q	P	Y	A	R	L	G	W	T	Q	E	F	K	S	T	G	R	.
Template Known Secondary structure											S	S	S																										T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S																					.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template SS confidence
		892	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.																				930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.
		974	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	G	T	S	T	A	G	S	G	M	T	F	S	P	S	Q	N	G	T	S	L	D	L	Q	A	G	L	E	A	R	V	R	E	N	I	T	L	G	V	Q	A	G	Y	A	H	S	V	S	G	S	S	A	E	G	Y	N	G	Q	A	T	L	N	V	T	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	G	R	V	E	L	G	A	G	V	D	A	A	L	G	K	G	H	N	L	Y	A	S	Y	E	Y	A	A	G	.	.	D	R	I	N	I	P	W	S	F	H	A	G	Y	R	Y	S	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B														G	G	G	B												.	.	S	S													B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template SS confidence
																				965	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.			.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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