Job Description P39180 Confidence 9.92% Date Thu Jan 5 11:58:24 GMT 2012 Rank 58 Aligned Residues 135 % Identity 13% Template c3jtyB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:benf-like porin; PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5 Resolution 2.58 Å

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		868	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	S	L	E	T	G	L	P	F	S	I	T	D	N	L	M	L	E	P	Q	L	Q	Y	T	W	Q	G	L	S	L	D	D	G	K	D	N	A	G	Y	V	K	F	G	H	G	S	A	Q	H	V	R	A	G	F	R	L	G	S	H	N	D	M	T	F	G	E	G	T	S	S	R	A	P	L	R	D	S	A	K
Query Conservation
Alig confidence																.																										.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.																										.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	Q	F	I	N	L	I	H	S	Q	P	L	G	D	.	W	T	L	G	A	N	L	G	F	F	Y	G	K	E	D	G	S	A	R	A	G	D	M	E	N	.	.	.	.	.	.	R	T	W	S	G	L	F	S	A	K	Y	G	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														S	S	.																T	T		T	T						.	.	.	.	.	.												T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.																										.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.							.	.	.	.	.	280	.	.	.	.	.	.	.	.
		948	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.				.	.	.	.	1000	.	.	.	.	.	.	.					.	.	1010	.	.	.	.	.	.	.	.	.	1020
Predicted Secondary structure																																																		.	.	.													.	.	.	.
Query SS confidence																																																		.	.	.													.	.	.	.
Query Sequence		H	S	V	S	E	L	P	V	N	W	W	V	Q	P	S	V	I	R	T	F	S	S	R	G	D	M	R	V	G	T	S	T	A	G	S	G	M	T	F	S	P	S	Q	N	G	T	S	L	.	.	.	D	L	Q	A	G	L	E	A	R	V	R	E	.	.	.	.	N	I	T	L	G	V	Q	A	G	Y	A	H	S
Query Conservation																																																		.	.	.													.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																							.	.	.													.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	T	F	Y	V	G	L	Q	K	L	T	G	D	S	A	W	M	R	V	N	G	T	S	G	G	T	L	A	N	D	S	Y	N	A	S	Y	D	N	A	K	E	K	S	W	Q	V	R	H	D	Y	N	F	A	A	L	G	V	P	G	L	T	L	M	N	R	Y	I	S	G	S	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.												S	S					B	T	T				T	T	S	T	T			S	S					S	T	T												T	T	T	T	T		T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		1021	.				.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence		V	S	.	.	.	G	S	S	A	E	G	Y	N	G	Q	A	T	L	N	V	T	F
Query Conservation				.	.	.
Alig confidence				.	.	.
Template Conservation
Template Sequence		V	H	T	A	T	V	S	D	G	K	E	W	G	R	E	S	E	V	A	Y	T	V
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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