Job Description P39180 Confidence 98.80% Date Thu Jan 5 11:58:24 GMT 2012 Rank 11 Aligned Residues 665 % Identity 13% Template c3h09B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:immunoglobulin a1 protease; PDBTitle: the structure of haemophilus influenzae iga1 protease Resolution 1.75 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	W	N	H	M	T	G	A	F	V	V	A	S	E	L	A	R	A	R	G	K	R	G	G	V	A	V	A	L	S	L	A	A	V	T	S	L	P	V	L	A	A	D	I	V	V	H	P	G	E	T	V	N	G	G	T	L	A	N	H	D	N	Q	I	V	F	G	T	T	N	G	M	T	I	S	T	G	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	Y	D	R	E	K	G	K	W	L	F	L	G	S	Y	D	F	W	A	G	Y	N	K	K	S	W	Q	E	W	N	I	Y	K	P	E	F	A	K	T	V	L	D	K	D	T	A	G	S	L	T	G	S	N	T	Q	Y	N	W	N	P	T	G	K	T	S	V	I	S	N	G	S	E	S	L	N	V	D	L	F
Template Known Secondary structure						T	T	T	T																																					T																		T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	P	D	N	E	A	N	T	G	G	Q	W	V	Q	D	G	G	T	A	N	K	T	T	V	T	S	G	G	L	Q	R	V	N	P	G	G	S	V	S	D	T	V	I	S	A	G	G	G	Q	S	L	Q	G	R	A	V	N	T	T	L	N	G	G	E	Q	W	M	H	E	G	A	I	A	T	G	T	V	I	N
Query Conservation
Alig confidence											.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.
Template Sequence		D	S	S	Q	D	T	D	S	K	.	.	.	.	.	.	K	N	N	H	G	K	S	V	T	L	R	G	S	G	T	L	T	L	N	N	N	I	D	Q	G	A	G	G	L	F	F	E	G	D	Y	E	V	K	G	T	S	D	S	T	T	W	K	G	A	G	V	S	V	A	D	G	K	T	V	T	W	K	V	H	N
Template Known Secondary structure			T	T	S	S	S				.	.	.	.	.	.				T															S	S					T	T														S	S	T	T		B			S	S						T	T								B
Template Predicted Secondary structure											.	.	.	.	.	.
Template SS confidence
		373	.	.	.	.	.	.	380	.							.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	G	W	Q	V	V	K	P	G	T	V	A	T	D	T	V	V	N	T	G	A	E	G	G	P	D	A	E	N	G	D	T	G	Q	F	V	R	G	D	A	V	R	T	T	I	N	K	N	G	R	Q	I	V	R	A	E	G	T	A	N	T	T	V	V	Y	A	G	G	D	Q	T	V	H	G	H	A	L	D	T
Query Conservation
Alig confidence																																																																.	.	.	.	.
Template Conservation																																																																.	.	.	.	.
Template Sequence		P	K	S	D	R	L	A	K	I	G	K	G	T	L	I	V	E	G	K	G	E	N	K	G	S	L	K	V	G	D	G	T	V	I	L	K	Q	Q	A	D	A	N	N	K	V	K	A	F	S	Q	V	G	I	V	S	G	R	S	T	V	V	L	.	.	.	.	.	N	D	D	K	Q	V	D	P	N	S	I	Y	F
Template Known Secondary structure			T	T							S	S	S							B	S	B									S								B			T	T				B	S		S						S	S							.	.	.	.	.	S	S	T	T	S	S		G	G	G
Template Predicted Secondary structure																																																																.	.	.	.	.
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.						.	510	.	.	.	.	.	.	.	.	.	520	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	N	G	G	Y	Q	Y	V	H	N	G	G	T	A	S	D	T	V	V	N	S	D	G	W	Q	I	V	K	N	G	G	V	A	G	N	T	T	V	N	Q	K	G	R	L	Q	V	D	A	G	G	T	A	T	N	V	T	L	K	Q	G	G	A	L	V	T	S	T	A	A	T	V	T	G	I	N	R	L	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	R	G	G	R	L	D	A	N	G	N	N	L	T	F	E	H	I	R	N	I	D	D	G	A	R	L	V	N	H	N	T	S	K	T	S	T	V	T	I	T	G	E	S	L	I	T	D	P	N	T	I	T	P	Y	N	I	D	A	P	D	E	D	N	P	Y	A	F	R	R	I	K	D	G	G	Q	L	Y	L
Template Known Secondary structure			T	T							T	T						S					S	S	T	T								S	S	S															G	G	G											S	S		T	T	S						T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360																														.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	S	V	V	E	G	K	A	D	N	V	V	L	E	N	G	G	R	L	D	V	L	T	G	H	T	A	T	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	D	D	G	G	T	L	D	V	R	N	G	G	T	A	T	T	V	S	M
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	L	E	N	Y	T	Y	Y	A	L	R	K	G	A	S	T	R	S	E	L	P	K	N	S	G	E	S	N	E	N	W	L	Y	M	G	K	T	S	D	E	A	K	R	N	V	M	N	H	I	N	N	E	R	M	N	G	F	N	G	Y	F	G	E	E	E	G	K	N	N	G	N	L	N	V	T	F	K	G	K	S
Template Known Secondary structure			T	T	T	T							T	T			T	T	S				S	S	T	T				S	S						S	S																T				B		S			S			T	T	S												S	S
Template Predicted Secondary structure
Template SS confidence
		602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	G	G	V	L	L	A	D	S	G	A	A	V	S	G	T	R	S	D	G	K	A	F	S	I	G	G	G	Q	A	D	A	L	M	L	E	K	G	S	S	F	T	L	N	A	G	D	T	A	T	D	T	T	V	N	G	G	L	F	T	A	R	G	G	T	L	A	G	T	T	T	L	N	N	G	A	I	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Q	N	R	F	L	L	T	G	G	T	N	L	N	G	D	L	K	V	E	K	G	T	L	F	L	S	G	R	P	T	P	H	A	R	D	I	A	G	I	S	S	T	K	K	D	Q	H	F	A	E	N	N	E	V	V	V	E	D	D	W	I	N	R	N	F	K	A	T	N	I	N	V	T	N	N	A	T	L	Y
Template Known Secondary structure		T	T							S					S	S							S															T	T	S				S				G	G	G		G	G	G					T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		682	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	G	K	T	V	N	N	D	T	L	T	I	R	E	G	D	A	L	L	Q	G	G	S	L	T	G	N	G	S	V	E	K	S	G	S	G	T	L	T	V	S	N	T	T	L	T	Q	K	A	V	N	L	N	E	G	T	L	T	L	N	D	S	T	V	T	T	D	V	I	A	Q	R	G	T	A	L	K	L	T
Query Conservation
Alig confidence																																																											.	.	.	.	.
Template Conservation																																																											.	.	.	.	.
Template Sequence		S	G	R	N	V	A	N	I	T	S	N	I	T	A	S	D	N	A	K	V	H	I	G	Y	K	A	G	D	T	V	C	V	R	S	D	Y	T	G	Y	V	T	C	T	T	D	K	L	S	D	K	A	L	N	S	F	N	A	.	.	.	.	.	T	N	V	S	G	N	V	N	L	S	G	N	A	N	F	V	L	G
Template Known Secondary structure				T	T												T	T						S	B		T	T								T	T	T								S								T	T	S			.	.	.	.	.					S						T	T						S
Template Predicted Secondary structure																																																											.	.	.	.	.
Template SS confidence
		762	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.						.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.
		542	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	T	V	L	N	G	A	I	D	P	T	N	V	T	L	A	S	G	A	T	W	N	I	P	D	N	A	T	V	Q	S	V	V	D	D	L	S	H	A	G	Q	I	H	F	T	S	T	R	T	G	K	F	V	P	A	T	L	K	V	K	N	L	N	G	Q	N	G	T	I	S	L	R	V	R	P	D	M	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	N	L	F	G	T	I	S	G	T	G	N	S	Q	V	R	L	T	E	N	S	H	W	H	L	T	G	D	S	N	V	N	Q	L	N	L	D	K	G	H	I	H	L	N	A	Q	N	D	A	N	K	V	T	T	Y	N	T	L	T	V	N	S	L	S	G	N	G	S	F	Y	Y	L	T	D	L	S	N	K	Q
Template Known Secondary structure		B					S						T	T							T	T						S	S																S	S	S				T	T	S																								G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		837	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.
		622	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Predicted Secondary structure
Query SS confidence
Query Sequence		N	N	A	D	R	L	V	I	D	G	G	R	A	T	G	K	T	I	L	N	L	V	N	A	G	N	S	A	S	G	L	A	T	S	G	K	G	I	Q	V	V	E	A	I	N	G	A	T	T	E	E	G	A	F	V	Q	G	N	R	L	Q	A	G	A	F	N	Y	S	L	N	R	D	S	D	E	S	W	Y	L
Query Conservation
Alig confidence			.	.							.																			.	.	.	.	.																																								.
Template Conservation			.	.							.																			.	.	.	.	.																																								.
Template Sequence		G	.	.	D	K	V	V	V	T	.	K	S	A	T	G	N	F	T	L	Q	V	A	D	K	T	G	E	P	.	.	.	.	.	T	K	N	E	L	T	L	F	D	A	S	N	A	T	R	N	N	L	N	V	S	L	V	G	N	T	V	D	L	G	A	W	K	Y	K	L	R	N	V	.	N	G	R	Y	D	L
Template Known Secondary structure			.	.							.														S	S				.	.	.	.	.		S									T	T	S	B		T	T										S	S	G	G	G									.	T	T
Template Predicted Secondary structure			.	.							.																			.	.	.	.	.																																								.
Template SS confidence
		917			.	.	920	.	.	.		.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.						.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980		.	.	.	.	.	.