Job Description P39180 Confidence 8.00% Date Thu Jan 5 11:58:24 GMT 2012 Rank 66 Aligned Residues 160 % Identity 9% Template c3fidA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:putative outer membrane protein (lpxr); PDBTitle: lpxr from salmonella typhimurium Resolution 1.90 Å

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		874	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.						900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.
Query SS confidence																												.	.	.	.	.
Query Sequence		G	L	P	F	S	I	T	D	N	L	M	L	E	P	Q	L	Q	Y	T	W	Q	G	L	S	L	D	.	.	.	.	.	D	G	K	D	N	A	G	Y	V	K	F	G	H	G	S	A	Q	H	V	R	A	G	F	R	L	G	S	H	N	D	M	T	F	G	E	G	T	S	S	R	A	P	L	R	D	S	A	K	H
Query Conservation																												.	.	.	.	.
Alig confidence																												.	.	.	.	.																																					.
Template Conservation																																																																					.
Template Sequence		A	W	Q	D	Q	I	E	N	R	Y	G	Y	T	A	K	G	M	V	S	L	T	P	A	I	D	I	L	G	V	N	V	G	F	Y	P	E	V	S	A	V	G	G	N	L	F	Q	Y	L	G	Y	G	A	T	V	A	L	G	N	D	K	T	F	N	S	D	N	G	.	F	G	L	L	S	R	R	G	L	I	H	T
Template Known Secondary structure		G	G	G	G		B																					T	T															S	S														S						T				.		G	G	G			T	T
Template Predicted Secondary structure																																																																					.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210
		949	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	S	E	L	P	V	N	W	W	V	Q	P	S	V	I	R	T	F	S	S	R	G	D	M	R	V	G	T	S	T	A	G	S	G	M	T	F	S	P	S	Q	N	G	T	S	L	D	L	Q	A	G	L	E	A	R	V	R	E	N	I	T	L	G	V	Q	A	G	Y	A	H	S	V	S	G	S	S	A	E	G
Query Conservation
Alig confidence																							.	.	.														.																				.
Template Conservation																							.	.	.														.																				.
Template Sequence		Q	K	E	G	L	I	Y	K	V	F	A	G	V	E	R	R	E	V	D	K	N	.	.	.	Y	T	L	Q	G	K	T	L	Q	T	K	M	E	.	T	V	D	I	N	K	T	V	D	E	Y	R	V	G	A	T	I	G	Y	.	S	P	V	A	F	S	L	S	L	N	K	V	T	S	E	F	R	T	G	D	D	Y
Template Known Secondary structure					S																		.	.	.					S		B	T	T	T				.				B		S														.	T	T													S	B	T	T
Template Predicted Secondary structure																							.	.	.														.																				.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.				.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		1029	1030	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	N	G	Q	A	T	L	N	V	T	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	Y	I	N	G	D	I	T	F	F	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions