Job Description P39180 Confidence 49.65% Date Thu Jan 5 11:58:24 GMT 2012 Rank 37 Aligned Residues 172 % Identity 16% Template c3bryB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:tbux; PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux Resolution 3.20 Å

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		861	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.																										.	.	910	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	R	G	W	G	W	L	G	S	L	E	T	G	L	P	F	S	I	T	D	N	L	M	L	E	P	Q	L	Q	Y	T	W	Q	G	L	S	L	D	D	G	K	D	N	A	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	F	G	H	G	S	A
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	Q	F	S	R	L	L	V	L	R	V	P	F	S	A	A	Y	H	V	T	D	K	L	T	V	G	A	S	V	D	A	V	W	T	S	L	N	L	G	T	L	L	D	V	S	Q	I	G	T	L	A	G	Q	G	R	V	S	G	T	L	V	P	T	L	L	G	V	P	G	L	S	G	G	Y	I	D	F	S	G	V
Template Known Secondary structure																				S	S	S	S																						S		S	S	S	S	T	T	T	S	S	S				T	T	T	T	T	T	T	S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		916	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.																				.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	H	V	R	A	G	F	R	L	G	S	H	N	D	M	T	F	G	E	G	T	S	S	R	A	P	L	R	D	S	A	K	H	S	V	S	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	N	W	W	V	Q	P	S	V	I	R	T	F	S	S	R	G	D	M	R	V	G
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	A	W	G	I	G	G	R	L	G	L	T	Y	Q	V	T	P	D	T	R	I	G	A	A	Y	Q	A	K	T	H	V	G	D	L	T	G	Q	A	T	L	S	A	V	G	N	I	P	L	K	G	D	V	T	V	R	N	F	Q	M	P	A	Q	L	T	V	G	I	S	H	Q	F	N	D	Q	L	S	V	S	A	D
Template Known Secondary structure																		T	T											B	B											B																		B												S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		977						.	.	980	.	.	.	.	.	.	.	.	.	990	.															.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	.	.	.	.	.	S	T	A	G	S	G	M	T	F	S	P	S	Q	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	S	L	D	L	Q	A	G	L	E	A	R	V	R	E	N	I	T	L	G	V	Q	A	G	Y	A	H	S	V	S	G	S	S	A	E	G	Y	N	G	Q	A	T	L	N	V
Query Conservation			.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Template Conservation																																																																.	.	.	.	.
Template Sequence		Y	Q	R	V	F	W	S	S	V	M	K	D	M	N	V	G	F	V	Q	S	G	S	A	A	N	L	D	L	S	L	P	Q	N	Y	R	D	I	S	V	F	G	I	G	A	E	Y	R	Y	N	A	K	W	T	F	R	G	G	F	H	Y	A	Q	.	.	.	.	.	E	T	T	S	L	T	G	G	V	S	Y	A	I
Template Known Secondary structure							G	G	G			S									S	S	S																												T	T												.	.	.	.	.													S
Template Predicted Secondary structure																																																																.	.	.	.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360						.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions