Job Description P39180 Confidence 96.51% Date Thu Jan 5 11:58:24 GMT 2012 Rank 24 Aligned Residues 198 % Identity 14% Template c3a2rX_ PDB info PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein ii; PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis Resolution 2.30 Å

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		790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	V	T	A	G	V	Y	G	A	A	G	H	S	S	V	D	V	K	D	D	D	G	S	R	A	G	T	V	R	D	D	A	G	S	L	G	G	Y	L	N	L	V	H	T	S	S	G	L	W	A	D	I	V	A	Q	G	T	R	H	S	M	K	A	S	S	D	N	N	D	F	R	A	R	G	W	G	W	L	G
Query Conservation
Alig confidence																				.	.	.	.	.																								.	.	.	.
Template Conservation																				.	.	.	.	.																								.	.	.	.
Template Sequence		A	G	F	S	G	S	V	Q	Y	V	P	R	D	N	A	N	D	V	.	.	.	.	.	D	K	Y	K	H	T	K	S	S	R	E	S	Y	H	A	G	L	K	Y	E	N	A	G	.	.	.	.	F	F	G	Q	Y	A	G	S	F	A	K	Y	A	D	L	N	T	D	A	E	R	V	A	V	N	T	A	N	A	H
Template Known Secondary structure		T	T															S	T	.	.	.	.	.	T	S	S	S	T	T	S															T	T	.	.	.	.																	T	T	S		B			T	T		T	T
Template Predicted Secondary structure																				.	.	.	.	.																								.	.	.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.						160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.					.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.		.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		S	L	E	T	G	L	P	F	S	I	T	D	N	L	M	L	E	P	.	Q	L	Q	Y	T	W	Q	G	L	S	L	D	D	G	K	D	N	A	G	Y	V	K	F	G	H	G	S	A	Q	H	V	R	A	G	F	R	L	G	S	H	N	D	M	T	F	G	E	G	T	S	S	R	A	P	L	R	D	S	A	K	H
Query Conservation																				.
Alig confidence																				.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	V	K	D	Y	Q	V	H	R	V	V	A	G	Y	D	A	N	D	L	Y	V	S	V	A	G	Q	Y	E	A	A	K	N	N	E	V	G	S	I	K	G	K	K	H	E	Q	T	Q	V	A	A	T	A	A	Y	R	F	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																		T	T																S	S	S	T	T	T	T																B	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		949	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		S	V	S	E	L	P	V	N	W	W	V	Q	P	S	V	I	R	T	F	S	S	R	G	D	M	R	V	G	T	S	T	A	G	S	G	M	T	F	S	P	S	Q	N	G	T	S	L	D	L	Q	A	G	L	E	A	R	V	R	E	N	I	T	L	G	V	Q	A	G	Y	A	H	S	V	S	G	S	S	.	A	E
Query Conservation																																																																															.
Alig confidence		.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation		.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	V	T	P	R	V	S	Y	A	H	G	F	K	A	K	V	N	G	V	K	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Y	Q	Y	D	Q	V	I	V	G	A	D	Y	D	F	S	K	R	T	S	A	L	V	S	A	G	W	L	K	Q	G	K	G	A	G	K	V	E
Template Known Secondary structure		.	.	.	.	.	.																T	T				G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G													S	S	S	S													S	S	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
								271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.																.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		1028	.	1030	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	N	G	Q	A	T	L	N	V	T	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	T	A	S	M	V	G	L	R	H	K	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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