Job Description P39180 Confidence 97.92% Date Thu Jan 5 11:58:24 GMT 2012 Rank 19 Aligned Residues 162 % Identity 12% Template c2wjqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. Resolution 2.00 Å

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		803	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	V	D	V	K	D	D	D	G	S	R	A	G	T	V	R	D	D	A	G	S	L	G	G	Y	L	N	L	V	H	T	S	S	G	L	W	A	D	I	V	A	Q	G	T	R	H	S	M	K	A	S	S	D	N	N	D	F	R	A	R	G	W	G	W	L	G	S	L	E	T	G	L	P	F	S	I	T	D	N
Query Conservation
Alig confidence													.	.	.	.	.														.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.														.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	T	L	D	V	R	G	G	Y	R	S	.	.	.	.	.	G	S	H	A	Y	E	T	R	L	K	V	S	E	.	G	W	Q	N	G	W	W	A	S	M	E	S	N	T	W	N	T	I	N	D	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	V	N	Y	A	I	K	L	D	D	Q
Template Known Secondary structure												T	.	.	.	.	.	T	T	T											.			T	T	S																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S	S	S
Template Predicted Secondary structure													.	.	.	.	.														.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.						.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.																	.	.	.	50	.	.	.	.	.	.	.	.
		883	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	L	E	P	Q	L	Q	Y	T	W	Q	G	L	S	L	D	D	G	K	D	N	A	G	Y	V	K	F	G	H	G	S	A	Q	H	V	R	A	G	F	R	L	G	S	H	N	D	M	T	F	G	E	G	T	S	S	R	A	P	L	R	D	S	A	K	H	S	V	S	E	L	P	V	N	W	W	V	Q	P	S
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	T	V	R	P	G	M	L	T	H	F	S	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	R	Y	G	P	Y	V	K	L	S	W	D	A	T	K	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	F	G	I	R
Template Known Secondary structure														T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.																			.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100																										.	.	.	.	.
		963	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020						.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.
Query Sequence		V	I	R	T	F	S	S	R	G	D	M	R	V	G	T	S	T	A	G	S	G	M	T	F	S	P	S	Q	N	G	T	S	L	D	L	Q	A	G	L	E	A	R	V	R	E	N	I	T	L	G	V	Q	A	G	Y	A	H	S	.	.	.	.	.	V	S	G	S	S	A	E	G	Y	N	G	Q	A	T	L	N	V
Query Conservation																																																												.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	R	Y	D	W	K	A	Y	R	Q	Q	D	L	S	.	.	.	.	.	.	.	.	.	.	G	D	M	S	R	D	N	V	H	R	W	D	G	Y	V	T	Y	H	I	N	S	D	F	T	F	A	W	Q	T	T	L	Y	S	K	Q	N	D	Y	R	Y	A	N	H	K	K	W	A	T	E	N	A	F	V	L	Q	Y
Template Known Secondary structure								S	S					T	T	.	.	.	.	.	.	.	.	.	.	S																			S	S	S													S	S	S				T	T	S	S	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.											120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		1038	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	M
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		176	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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