Job Description P39180 Confidence 98.48% Date Thu Jan 5 11:58:24 GMT 2012 Rank 15 Aligned Residues 147 % Identity 15% Template c2jmmA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein Resolution UNK

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		835	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	G	L	W	A	D	I	V	A	Q	G	T	R	H	S	M	K	A	S	S	D	N	N	D	F	R	A	R	G	W	G	W	L	G	S	L	E	T	G	L	P	F	S	I	T	D	N	L	M	L	E	P	Q	L	Q	Y	T	W	Q	G	L	S	L	D	D	G	K	D	N	A	G	Y	V	K	F	G	H	G	S
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.														.	.								.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.														.	.								.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	N	T	W	Y	T	G	A	K	L	G	W	S	Q	Y	S	R	E	.	.	.	.	.	.	.	.	.	.	.	.	N	Q	L	G	A	G	A	F	G	G	Y	Q	V	.	.	N	P	Y	V	G	F	E	.	.	.	.	M	G	Y	D	W	L	G	R	M	.	.	.	.	.	.	.	.	.	.	.	.	P	R	K
Template Known Secondary structure		S	S												T	T			S	.	.	.	.	.	.	.	.	.	.	.	.	S													.	.	S	S	S					.	.	.	.								S	S	.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.														.	.								.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.													.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.					.	.	.	.	.	.	.	.	50													.	.	.
		915	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	H	V	R	A	G	F	R	L	G	S	H	N	D	M	T	F	G	E	G	T	S	S	R	A	P	L	R	D	S	A	K	H	S	V	S	E	L	P	V	N	W	W	V	Q	P	S	V	I	R	T	F	S	S	R	G	D	M	R	V	G	T	S	T	A	G	S	G	M	T	F	S	P	S	Q	N	G	T	S
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Sequence		A	Q	G	V	Q	L	T	A	K	L	G	Y	P	K	L	G	T	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	I	Y	T	R	L	G	G	M	V	W	.	.	.	.	.	.	.	R	A	D	T	S	D	K	D	G	N	G	Y	I	S	A	A	E	A	S	V	S
Template Known Secondary structure															T	T		T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	S	S	B						S	S	S						B
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.																						.	.	.	.	.	.	.	80	.	.	.	.								.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		995	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	L	Q	A	G	L	E	A	R	V	R	E	N	I	T	L	G	V	Q	A	G	Y	A	H	S	V	S	G	S	S	A	E	G	Y	N	G	Q	A	T	L	N	V	T	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	V	F	A	G	G	V	E	Y	V	I	R	R	R	I	T	P	E	I	A	T	R	L	E	Y	Q	W	T	N	N	A	S	D	N	G	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure													S	S	S		S	S	S											S	S	S	S													S
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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