Job Description P0AA80 Confidence 64.54% Date Thu Jan 5 11:12:09 GMT 2012 Rank 6 Aligned Residues 231 % Identity 9% Template c3b9yA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein Resolution 1.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	D	T	V	D	E	K	K	K	G	V	H	T	R	Y	L	I	L	L	I	I	F	I	V	T	A	V	N	Y	A	D	R	A	T	L	S	I	A	G	T	E	V	A	K	E	L	Q	L	S	A	V	S	M	G	Y	I	F	S	A	F	G	W	A	Y	L	L	M	Q	I	P	G	G	W	L	L	D	K	F	G
Query Conservation
Alig confidence																																									.	.	.	.	.
Template Conservation																																									.	.	.	.	.
Template Sequence		A	L	T	T	A	A	Q	R	A	Q	P	I	E	S	D	A	T	S	D	R	F	S	M	L	G	S	M	V	L	W	L	F	W	P	S	F	A	T	A	.	.	.	.	.	I	V	P	F	E	Q	M	P	Q	T	I	V	N	T	L	L	A	L	C	G	A	T	L	A	T	Y	F	L	S	A	L	F	H	K	G	K
Template Known Secondary structure										T	S																													T	.	.	.	.	.	T	S		G	G	G																											T	T	T
Template Predicted Secondary structure																																									.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.						.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	K	V	Y	T	Y	S	L	F	F	W	S	L	F	T	F	L	Q	G	F	V	D	M	F	P	L	A	W	A	G	I	S	M	F	F	M	R	F	M	L	G	F	S	E	A	P	S	F	P	A	N	A	R	I	V	A	A	W	F	P	T	K	E	R	G	T	A	S	A	I	F	N	S	A	Q	Y	F	S	L
Query Conservation
Alig confidence																							.	.	.	.	.
Template Conservation																							.	.	.	.	.
Template Sequence		A	S	I	V	D	M	A	N	A	A	L	A	G	G	V	A	I	G	S	V	C	.	.	.	.	.	N	I	V	G	P	V	G	A	F	V	I	G	L	L	G	G	A	I	S	V	V	G	F	V	F	I	Q	P	M	L	E	S	K	A	K	T	I	D	T	C	G	V	H	N	L	H	G	L	P	G	L	L	G	G
Template Known Secondary structure											T	T							T	T	T	T	.	.	.	.	.	T	T	S																						T									S					T	T						T	T
Template Predicted Secondary structure																							.	.	.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.						.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	F	S	P	L	L	G	W	L	T	F	A	W	G	W	E	H	V	F	T	V	M	G	V	I	G	F	V	L	T	A	L	W	I	K	L	I	H	N	P	T	D	H	P	R	M	S	A	E	E	L	K	F	I	S	E	N	G	A	V	V	D	M	D	H	K	K	P	G	S	A	A	A	S	G	P	K	L	H
Query Conservation
Alig confidence											.	.
Template Conservation											.	.
Template Sequence		F	S	A	I	L	I	V	P	G	.	.	I	A	V	A	Q	L	T	G	I	G	I	T	L	A	L	A	L	I	G	G	V	I	A	G	A	L	I	K	L	T	G	T	T	K	Q	A	Y	E	D	S	H	E	F	I	H	L	A	G	P	E	D	E	H	K	A	E	R	L	V	L	E	A	K	T	E	I	Q	G	L
Template Known Secondary structure								S	T	T	.	.																													T	T				S	S	T	T		G	G	G	T	S	S	S				G	G	G	T	T
Template Predicted Secondary structure											.	.
Template SS confidence
		333	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		242	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		411	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions