 |
Job Description | P0A8J2 | Confidence | 2.37% | Date | Thu Jan 5 11:07:58 GMT 2012 |
Rank | 74 | Aligned Residues | 111 |
% Identity | 14% | Template | c3nrdB_ |
PDB info |
PDB header:nucleotide binding protein | Chain: B: PDB Molecule:histidine triad (hit) protein; |
PDBTitle: crystal structure of a histidine triad (hit) protein (smc02904) from2 sinorhizobium meliloti 1021 at 2.06 a resolution
|
Resolution | 2.06 Å |
|
 |
  |   |
16 | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | |
50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | |
|
|
. | . | . | . | . | 90 | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
| . | . | . |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
Query Sequence |   |
L | V | H | D | H | Q | T | V | L | A | K | A | E | G | G | V | V | A | V | F | A | N | N | A | P | A | F | Y | A | V | T | P | A | R | . |
L | A | E | L | L | A | L | E | E | K | L | A | R | P | G | S | D | V | A | L | D | D | Q | L | Y | Q | E | P | Q | A | A | P | V | A | V | . |
. |
. |
P | M | G | K | F | A | M |
Query Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |
|   |
|
|   |   |   | . |
|   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |
|   |   |
| . | . | . |
|   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |
|
|   |
|
|   |
|   |   |   |
|   |
|
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|   |   |
|
|
Template Sequence |   |
L | E | R | D | G | I | P | I | G | T | L | G | L | C | Q | X | R | L | X | N | D | R | R | W | P | W | L | I | L | V | P | Q | R | A | D | I | K | E | V | F | E | L | T | P | L | D | Q | A | X | L | T | F | E | T | N | L | V | A | A | G | L | K | K | A | T | G | A | E | K | I | N | I | G | A | L | G | N | I | V | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
| S | S |  |  |  |  |  |  | S |
| T | T | S |
|  |  |  |  |  |  |
|
| T | T |
|
| S | G | G | G | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  |  |
|
|
| S | S | S |
|
Template Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . |
  |
  |   |
92 | . | . | . | . | |
|
|
|
. | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
| . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | P | D | W | Q | . |
. |
. |
. |
P | D | A | D | F | I | R | L | A | A | L | W | G | V | A | L | R | E | P | V | T | T | E | E | L | A | S | F | I | A |
Query Conservation |   |
|   |   |
|
| . | . | . | . |
|
|   |
|
|   |
|
|
|
|
|   |
|
|   |
|   |
|   |
|   |   |   |
|
|   |
|
|
|   |
Alig confidence |   |
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|
|
|
|
|   |   |   |
|   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
Template Sequence |   |
Q | L | H | V | H | V | I | A | R | R | E | G | D | P | N | W | P | G | P | V | W | G | F | G | K | A | E | P | W | P | E | E | E | H | R | T | F | A | A |
Template Known Secondary structure |   |
S |
|
|  |  |  |  |  |  |
| T | T | S | T | T | T | T | S |
| S | T | T |
| S |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|