Job Description P0A6D3 Confidence 9.89% Date Thu Jan 5 11:02:52 GMT 2012 Rank 41 Aligned Residues 139 % Identity 17% Template c3gkuB_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:probable rna-binding protein; PDBTitle: crystal structure of a probable rna-binding protein from clostridium2 symbiosum atcc 14940 Resolution 2.95 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	M	L	N	A	L	T	A	L	G	V	S	Y	T	L	S	A	D	R	T	R	C	E	I	I	G	N	G	G	P	L	H	A	E	G	A	L	E	L	F	L	G	N	A	G	T	A	M	R	P	L	A	A	A	L	C	L	G	S	N	D	I	V	L	T	G	E	P	R	M	K	E	R	P	I	G	H	L	V
Query Conservation
Alig confidence														.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	V	T	K	A	L	I	E	L	Q	T	.	.	.	.	T	S	D	K	L	T	Y	E	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	A	I	I	R	A	K	R	K	E	T	L	Q	D	K	A	I	E	F	L	E
Template Known Secondary structure											T	T		.	.	.	.		G	G	G							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.					.	.	.	.	.	30	.	.	.	.																																	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
		131	.	.	.	.	.	.			.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure									.	.		.	.																															.	.
Query SS confidence									.	.		.	.																															.	.
Query Sequence		D	A	L	R	L	G	G	.	.	A	.	.	K	I	T	Y	L	E	Q	E	N	Y	P	P	L	R	L	Q	G	G	F	T	G	G	N	V	D	V	D	G	S	V	.	.	S	S	Q	F	L	T	A	L	L	M	T	A	P	L	A	P	E	D	T	V	I	R	I	K	G	D	L	V	S	K	P	Y	I	D	I	T
Query Conservation									.	.		.	.																															.	.
Alig confidence									.	.		.	.																															.	.												.
Template Conservation																																																									.
Template Sequence		Q	V	F	D	A	X	N	X	A	V	D	I	S	V	E	Y	N	E	T	E	K	E	X	N	V	N	L	K	G	D	D	X	G	I	L	I	G	K	R	G	Q	T	L	D	S	L	Q	Y	L	V	S	L	V	V	N	.	K	S	S	S	D	Y	I	R	V	K	L	D	T	E	N	Y	R	E	R	R	K	E	T	L
Template Known Secondary structure							T	T											T	T	T	T								S	G	G	G	G	G	G	T	T	T																		.		T		S	S									T	T
Template Predicted Secondary structure																																																									.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	L	M	K	T	F	G	V	E	I	E	N	Q	H	Y	Q	Q	F	V	V	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	L	A	K	N	I	A	Y	K	V	K	R	T	K	R	S	V	S	L	E	P
Template Known Secondary structure																S	S
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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