 |
Job Description | P0AGE0 | Confidence | 14.97% | Date | Thu Jan 5 11:28:52 GMT 2012 |
Rank | 91 | Aligned Residues | 75 |
% Identity | 13% | Template | c3e9hB_ |
PDB info |
PDB header:ligase | Chain: B: PDB Molecule:lysyl-trna synthetase; |
PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine
|
Resolution | 2.10 Å |
|
 |
  |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | |
|
|
|
. | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  | . | . | . | . |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | V | I | L | V | G | N | L | G | Q | D | P | E | V | R | Y | M | P | N | G | G | A | V | A | N | I | T | L | A | T | S | E | S | W | R | D | K | A | T | G | E | M | K | E | Q | T | E | W | H | R | V | V | L | F | G | K | L | A | E | . |
. |
. |
. |
V | A | S | E | Y | L | R | K | G | S | Q | V | Y | I | E | G | Q |
Query Conservation |   |
  |
|   |
|   |
|   |
|   |   |
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   | . | . | . | . |   |   |   |   |   |
|   |
|
|   |   |
|   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
| . |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|   |
|
|
|   |   | . | . | . | . | . |   |
|   |   |
|   | . |   |   |
|
|   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |   |
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |
|   |
Template Sequence |   |
E | V | A | V | A | G | R | I | M | T | . |
. |
. |
. |
. |
K | R | G | M | G | K | . |
A | G | F | A | H | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Q | D | V | T | G | Q | I | Q | I | Y | V | R | Q | D | D | V | G | E | Q | Q | Y | E | L | F | K | I | S | D | L | G | D | I | V | G | V | R | G | T |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |
|
| T | T | . |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |
|
| T | T |
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |
|
|
|
|
| . |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
58 | . | 60 | . | . | . | . | . | . | . | |
|
|
|
|
. | . | 70 | . | . | . | |
. | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . |
  |
  |   |
84 | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 |
Predicted Secondary structure |   |
 |  |  |
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | R | T | R | K | W | T | D | Q | S | G | Q | D | R | Y | T | T | E | V | V | V | N | V | G | G | T | M |
Query Conservation |   |
|   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |
|   |   |
|   |   |   |
Alig confidence |   |
|
| . | . | . | . |
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   | . | . | . | . |   |   |   |   |
|
| . | . | . | . |   |
|
|   |   |   |   |   |   |
|
|
Template Sequence |   |
M | F | . |
. |
. |
. |
K | T | K | V | G | E | . |
. |
. |
. |
L | S | I | K | V | S | S | Y | E | F | L |
Template Known Secondary structure |   |
 |  | . | . | . | . |  |
| T | T |
|
| . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  | . | . | . | . |  |
|
|
|
|
| . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
118 | . | |
|
|
|
120 | . | . | . | . | . | |
|
|
|
. | . | . | . | 130 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|