 |
Job Description | P0AGE0 | Confidence | 92.25% | Date | Thu Jan 5 11:28:52 GMT 2012 |
Rank | 30 | Aligned Residues | 66 |
% Identity | 11% | Template | c1fguA_ |
PDB info |
PDB header:replication | Chain: A: PDB Molecule:replication protein a 70 kda dna-binding subunit; |
PDBTitle: ssdna-binding domain of the large subunit of replication2 protein a
|
Resolution | 2.50 Å |
|
 |
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | |
|
|
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | R | G | V | N | K | V | I | L | V | G | N | L | G | Q | D | P | E | V | R | Y | M | P | N | G | G | A | . |
. |
. |
V | A | N | I | T | L | A | T | S | E | S | W | R | D | K | A | T | G | E | M | K | E | Q | T | E | W | H | R | V | V | L | F | G | K | L | A | E | V | A | S | E | Y | L | R | K | G | S | Q | V | Y |
Query Conservation |   |
  |   |   |
|
|   |
|   |
|   |
|   |
|   |   |
|
|   |   |   |   |   |   |   |
|   |   | . | . | . |   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|
|   |
Template Sequence |   |
T | P | Y | Q | S | K | W | T | I | C | A | R | V | T | N | K | S | Q | I | R | T | W | S | N | S | R | G | E | G | K | L | F | S | L | E | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | D | E | S | G | E | I | R | A | T | A | F | N | E | Q | V | D | K | F | F | P | L | I | E | V | N | K | V | Y | Y |
Template Known Secondary structure |   |
| T | T |
| S |
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
| S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| T | T |
|  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
191 | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . |
  |
  |   |
80 | . | . |
Predicted Secondary structure |   |
 |  |  |
Query SS confidence |   |
|
|
|
Query Sequence |   |
I | E | G |
Query Conservation |   |
|   |
|
Alig confidence |   |
|
|
|
Template Conservation |   |
|   |   |
Template Sequence |   |
F | S | K |
Template Known Secondary structure |   |
 |  |
|
Template Predicted Secondary structure |   |
 |
|
|
Template SS confidence |   |
|
|
|
  |   |
257 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|